Microcebus murinus (gray mouse lemur): 105858134
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Entry
105858134 CDS
T07238
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mmur
Microcebus murinus (gray mouse lemur)
Pathway
mmur03013
Nucleocytoplasmic transport
mmur03015
mRNA surveillance pathway
mmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105858134 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
105858134 (DDX39B)
03015 mRNA surveillance pathway
105858134 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmur03019
]
105858134 (DDX39B)
03041 Spliceosome [BR:
mmur03041
]
105858134 (DDX39B)
Enzymes [BR:
mmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105858134 (DDX39B)
Messenger RNA biogenesis [BR:
mmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105858134 (DDX39B)
Spliceosome [BR:
mmur03041
]
Complex C
Other components
EJC/TREX
105858134 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105858134 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105858134
NCBI-ProteinID:
XP_012596506
Ensembl:
ENSMICG00000017349
UniProt:
D0VXS6
LinkDB
All DBs
Position
6:complement(1420102..1433530)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacgatgtagacaatgagctcttggattacgaagatgatgaggtggagaca
gcagctgggggtgatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccatccacagttctggctttcgtgactttctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagttcagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagataagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctttttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgatgc
attgctctggcccagctcctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagcggctttctcgatatcagcagtttaaagattttcaacgacgaatt
ctcgtggctaccaacctatttggccgaggcatggacattgagcgggtgaacattgccttt
aactacgacatgcctgaggattctgacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaagatcgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcttacattgaacagacacggtag
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integrated database retrieval system
