Microcebus murinus (gray mouse lemur): 105879663
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Entry
105879663 CDS
T07238
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mmur
Microcebus murinus (gray mouse lemur)
Pathway
mmur04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mmur00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
105879663 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmur04147
]
105879663 (COL18A1)
00535 Proteoglycans [BR:
mmur00535
]
105879663 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mmur00536
]
105879663 (COL18A1)
Exosome [BR:
mmur04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105879663 (COL18A1)
Proteoglycans [BR:
mmur00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
105879663 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mmur00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105879663 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
105879663
NCBI-ProteinID:
XP_012635491
Ensembl:
ENSMICG00000037125
LinkDB
All DBs
Position
31:46110774..46209141
Genome browser
AA seq
1753 aa
AA seq
DB search
MAPDPSGRLGLLLLTCCLAAARAQLLGLDWLWANKAASPAPTLASEPQGHLPGQPATATR
DGPTERGAVPASPEPPLELPEGGRTGAPDPHPTTAAAVSPATGEENIAGVGAKILNVAQG
IRSFVQLWDDTTPAQSTAGVQTPAPEAPPGPPTHPGPSSAPQEDVTATLWPSSGAPWAPG
APTAAAATPPAPTPAAPSLAGPQAPLGGPSVPPPPPGRASLSSAPGGAPSRGGWRAPGWP
PAPDGKGLSPVAAGPGQRHPDVPRHTAPLHPLVTGSLGAHAALSSASLGAQWSGTALTAL
VGHGGAWASSVADPVGPGPANRSAPPGAGRCLPLPPSLPTCGRLGIRRAWLPNHLQHRSS
EEAQAAAQAWGGLLRTRCHPFLAWFFCLLLAPPCSPGPPPAPPPCRQFCEALEDACWRHL
RGGRLPVACAALPAQEHGDCVFIGPAAESAGEEVGLLQLLGEPPPPHVAQIDDPEVGPAY
SFGPGANSGQLARYHVPSPFFRDFSLLFHVRPATEAAGVLFAITDTARAVVLVGVKLSAV
RDGHQDVVLLYTEPGAGQTHTAASFRLPALAGRWTRLALSVDGGSVALYVDCEEIQRMPL
TRSSRGLELEPGAGLFVAQAGEADPDKFQGRIAELRVRGDPQVSARHCLDEEDDDADGAS
GDFGSGLAETRELLGEDTGAKPGLPQPPPVTSPPLAGGSSTEVSRTEEMEDTTAASLGAH
TLPGSGLVSTVDERVRGPGGSQKEGGQKGQKGEPGAPGLPGSIGPPGPPCVMGPPGPPCP
SSHGSPLGPVGPGAQGPHTQPVTGPRGPQGLPGKDGAPGRDGQPGDSGQDGKPGDTGPQG
FPGTPGDVGPKGEKGDPGVGARGPPGPQGPPGPPGPAFRHDRLTFIDMEGSGFGGDLETL
RGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPPGLPGVPGREGPPGFPGPPGPPGAP
GREGPPGRTGQKGGLGEAGAPGPKGSTGDPGPMGAPGENGLAGAPGPAGPPGPPGPPGPP
GPGFAAGFDDMEGSGAPFWSTGQGSDGPQGRPGPPGLKGDPGTPGPPGAKGEVGADGARG
FPGLPGREGAAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGALL
SAPGPEGRPGYAGFPGPAGPKGDLGSKGERGFPGPKGEKGEPGGIFGPDGSTTAPALKGA
KGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGEASLALGTRGMPGPPG
PPGPPGPPGTPVYDSNAFVESGRPGPPGLPGYQGPPGPKGDKGEVGPPGPPGQFPFDLLH
LEAEMKGEKGERGDAGQKGERGAPGGGGFFGSSVPGPPGPPGPPGYPGIPGAKGETIRGP
PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTTSA
SSGVRIWATYQALLDQVHEVPEGWLMFVAEREELYVRVRNGFRKVQLEARTPLPRGTDNE
VAALQPPVVQLHDSNPYPRREHPHSTARPWRADDILASPPRLPAPQPYPGAPHHGSYVHL
RPARPTGPPAHTHQDFQPVLHLIALNSPLSGGMRGIRGADFQCFQQARAAGLAGTFRAFL
SSRLQDLYSIVRRADRAAVPVVNLKDEELFPSWEALFSGSQAQLRPGARILSFDGKDVLR
HPAWPQKSVWHGSDPSGRRLTESYCETWRTEAPEATGQASSLLAGRLLGQQAASCRAAYA
VLCIENSFVSGSQ
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggccgcctgggcctgctgctgctcacctgctgcctcgcggcc
gcccgcgcccagctgctgggcctggactggctgtgggccaacaaggcggccagccccgcg
cccaccctggcctcggagccccagggccaccttcctgggcagcctgccacggccacccgc
gatggccccacagagcgaggggcagtccccgccagccccgagccgcccctggagctgccg
gagggtggccggactggggcccctgacccccaccccaccaccgcggccgccgtgagcccc
gccacgggggaggagaacattgccggcgttggagccaagatcctgaacgtggcccaaggc
atccggagcttcgtgcagctgtgggatgacaccacccccgcccagagcacggccggggtg
cagaccccagcccccgaggcccccccgggcccccccacccaccctgggccctccagcgcc
ccccaggaggacgtgactgcaacgctctggcccagcagtggtgctccctgggctccaggc
gcccccacagccgcggctgccacgcccccggcacccacgccagccgccccctccctggcc
gggccccaggccccactcggggggccctccgtgccgccgccgcccccaggtagagcgtct
ctctcctctgcgccgggtggggctccttcccggggaggctggcgggcccccggctggccc
ccggctccggacggcaaaggactctcacctgtggcagccggtcccggccagcggcacccc
gacgtccccaggcacacggcgcccctgcaccccctggtgacgggctccctgggcgcacac
gctgctctctcctccgcctccctgggcgcacagtggtctggaacggcactcacggctttg
gtggggcacggcggggcttgggcttcctccgtggcggaccccgtggggcctggtcctgct
aaccgctctgctcctcccggcgccggccgctgcctgccgctgccgccctcgctgcccacc
tgcggccgcctgggcatccgccgcgcgtggctgcccaaccacctgcagcaccggagcagt
gaggaggcacaggctgccgcgcaggcctgggggggcctgctccggacgcgctgccacccc
ttcctggcctggttcttctgcctgctgctggcccccccctgcagcccgggccccccgccc
gcccccccgccctgccgccagttctgcgaggccctggaggacgcctgctggcgccacctg
cgcggcggccggctgcccgtggcctgtgccgccctcccggcccaggagcacggggactgc
gtgttcatcgggccggctgcagagagcgccggcgaggaggtggggctgctgcagctgctc
ggggagcccccgcccccgcacgtcgcccagatcgacgaccccgaggtcgggccggcctac
tccttcgggccgggcgccaacagcggccagctggcccgctaccacgtccccagccccttc
ttccgggacttctcgctgctgttccacgtgcggccggccacggaggccgccggggtgctg
ttcgccatcacggacacggcacgggccgtggtcctggtgggcgtgaagctctcggcggtg
cgggacgggcaccaggacgtcgtgctgctctacacggagccgggcgccggccagacccac
acggccgccagcttccgcctgcccgccctggccggccggtggacccgcctcgcgctcagc
gtggatggcggctctgtggcactctacgtggactgtgaggagatccagaggatgccgctc
acgcggtcctcgcggggcctggagctggagcccggcgccggcctctttgtggcccaggcc
ggagaggcggaccccgacaagttccaggggaggatcgcggagctgagggtgcgcggggac
ccccaggtgagcgcccggcactgcctggacgaggaggacgatgacgcggacggggcgtcc
ggggacttcggcagtggccttgcggagacccgggagctgctcggggaggacacgggcgca
aagcccggcctcccccagccgcccccggtcacctccccgcccttggctggaggcagcagc
acggaagtttccagaacagaagaaatggaagacaccacagcggcttcattaggagcgcac
accctgcctggctcaggcctggtttccaccgtggacgagagagtccggggccctgggggc
tcccagaaggagggcggccagaaaggacagaagggggagccgggagctccgggcctgcct
ggctccatcggccccccagggcccccgtgcgtgatgggtcccccgggccccccgtgcccg
tccagccatgggagtccgctgggtcccgtgggccccggggcacagggcccgcacacgcag
cctgtcacggggccgcggggcccccaggggctgccagggaaggacggcgccccaggaagg
gatggccagccgggcgactccggccaagacggcaaacccggcgacactgggccacagggc
ttcccggggacgccgggagacgtgggccccaagggcgagaagggggatcccggggttggg
gcaagaggacccccaggaccccaggggccgccggggccgccaggacctgccttcagacac
gacaggctgaccttcatcgacatggaggggtccggtttcggcggcgacctggagaccctc
cggggcccgagaggcttccctggcccccccgggccccctggcgtcccaggcctgcccggc
gagccaggccgcttcggggtgaacagctccgacgtcccaggccccccaggccttcctggt
gtgccggggcgggaagggccccccggattccccggccccccggggcccccgggtgctcca
ggccgagaggggccgccaggaaggaccgggcagaaaggcggcctcggtgaagcgggtgcc
ccaggacccaagggaagcacgggagaccctggtcccatgggcgcacccggagagaacggc
ttggcgggagcgcccgggccagccggaccgccagggccccccgggccccctgggcccccc
ggaccaggattcgcggctgggtttgacgacatggaaggctccggggctcccttctggtcg
acgggtcaaggctcggatgggccgcagggacggcccggcccgccaggactcaagggggat
cccgggacgcctgggccacccggggccaagggagaagtcggggcggacggggcccgcggg
ttccccggcctgcccggcagagagggcgctgccgggccccagggaccgaaaggggacaga
gggagccggggagagaagggcgacccagggaaggacggagtggggcagcccggcctcccc
gggccccccggaccgccggggcccgtggtctacgtgtcggagcaggacggagccctgctg
agcgcgccagggcccgagggcaggccgggctacgcaggcttccccggacccgccgggccc
aagggcgacctgggctccaagggtgaacgaggcttcccaggacccaagggagagaagggc
gaacccggcggcatcttcggccccgacggcagcaccacggcccctgccctgaaaggagcg
aagggagagcccggcttccgaggacccccgggcccatacggacggccagggcacaagggg
gagatcggctttcctggacggccgggtcgccccgggatgaacggactgaaaggagagaaa
ggggagccgggagaggccagcctggcgctgggcacgaggggaatgcccggcccccccggg
cctccgggacccccaggccccccggggactcctgtctacgacagcaacgcatttgtggag
tccggccgccctgggcctccaggactgccagggtaccaggggcctcctggaccaaagggt
gacaagggagaagtgggcccccccggacccccagggcagttcccgttcgacctgctgcac
ttagaggctgaaatgaagggggagaaaggagagcggggagacgccggacagaaaggagag
aggggcgcgcccgggggcggcggcttcttcggctccagcgtgccgggccctcccggcccc
ccaggccctccgggctacccagggatcccgggcgccaaaggagagaccatccggggcccg
cccggcccgcctggacctcagggaccccccggcatcggctacgaggggcgccagggcccc
cccggccccccaggcccgccgggacccccgtcatttcccggcccccacaggcagaccatc
agcgttcccggaccccccggcccccctgggcccccaggaccccctggaaccaccagtgcc
tcctcaggggtgaggatctgggccacgtaccaggccctgctggaccaggtgcacgaggtc
cccgagggctggctcatgttcgtggccgagcgggaggagctctacgtgcgcgtccggaac
gggttccgcaaggtccagctggaggcccggacgccgctcccgcggggcacggacaatgag
gtggccgccctgcagccccccgtggtgcagctgcacgacagcaacccctacccccggcgc
gagcacccccactccacagcgcggccctggcgggcggacgacatcctggccagccccccg
cgcctgcccgcgccccagccctaccccggggccccgcaccacggctcctacgtgcacctc
cggcctgcgcgccccacagggccccccgcccacacccaccaggacttccagccggtgctg
cacctgatcgcgctcaacagcccgctgtcgggcggcatgcgcggcatccgcggggccgac
ttccagtgcttccagcaggcgcgggcggcggggctggctggcaccttccgggccttcctg
tcctcgcggctgcaggacctctatagcatcgtgcgccgcgccgaccgcgccgccgtgccc
gtcgtcaacctcaaggatgaggagctgttccccagctgggaggccctgttctccggctcc
caggcccagctgaggccgggggcccgcatcctctccttcgatggcaaggacgtcctgaga
cacccggcctggccccagaagagcgtgtggcacggctcggaccccagcgggcgccggctg
accgagagctactgcgagacgtggcggacggaggcgcccgaggccacgggccaggcctcc
tcgctgctggcgggcaggctgctgggccagcaggccgcgagctgccgcgccgcctacgcc
gtgctgtgcatcgagaacagcttcgtgagcggctcccagtag
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