Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_0549
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Entry
MYCMA_0549 CDS
T02177
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mmv
Mycobacteroides abscessus subsp. massiliense GO 06
Pathway
mmv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MYCMA_0549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmv03400
]
MYCMA_0549
Enzymes [BR:
mmv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MYCMA_0549
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MYCMA_0549
DNA repair and recombination proteins [BR:
mmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MYCMA_0549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AFN62714
LinkDB
All DBs
Position
complement(3718254..3719117)
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AA seq
287 aa
AA seq
DB search
MPELPEVEALADHLRRHATGATIGRIDISALSVLKTFDPPITALHGQTVTGATRWGKYLG
LQAGDLYLVTHLSRAGWLRWSDKLAAAPVKPGKGPIALRVHLGTPGDAPGFDLTEAGTQK
RLAVWVVRDPAAVPQIASLGPDALSLTADGLADIVAGTTARLKNVITDQRVIAGIGNAYS
DEILHVAKLSPFASGKTLSEGQLTALYEAMQSVLTDAVERSVGQQAATLKGEKRSGLRVH
ARTGMPCPVCGDVVREVSFADKSFQYCPTCQTGGKVLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactaccggaagtcgaggcgctcgcggatcacctgcgccgccacgccaccggg
gccaccatcggccgcattgatatctcggccctgtccgtgctcaagaccttcgatccgccg
atcaccgccttgcatggccagacggtgacgggagctactcgctggggcaagtatctggga
ctgcaagcaggggatctgtatctcgttacccacctgtcccgtgcggggtggttgcgctgg
tcggacaagctggcggcggcacccgtcaagccgggaaagggccccatcgcgctgcgggtg
cacctcggaacacctggtgatgcgccaggattcgatctcacggaggccggcacccaaaaa
cggttggctgtgtgggtggtgagagatcccgccgcggtgccgcagatagcgtccctgggg
cccgacgcgctctctctcaccgccgacgggctggccgacatagtggccgggaccactgcg
cgcctgaagaacgtgatcaccgaccaacgggtgatcgccggaatcggcaacgcctacagc
gacgagatcctgcatgtggccaagctgtcacccttcgccagcgggaaaacgctgtccgaa
gggcaattgaccgcattgtacgaggcgatgcagtcggttctcaccgatgcggtagagcgc
agtgttggacaacaggcggcaactcttaagggggagaagcgatccgggttacgggtgcat
gcccgcaccgggatgccctgcccggtgtgcggcgatgtggtgcgggaggtgtcattcgcc
gataagtcgttccagtactgcccgacctgccagaccggtggcaaggtgctagccgaccgt
cggctctcgcgactgctcaaataa
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