Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_13940
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Entry
MYCMA_13940 CDS
T02177
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmv
Mycobacteroides abscessus subsp. massiliense GO 06
Brite
KEGG Orthology (KO) [BR:
mmv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmv03019
]
MYCMA_13940
Enzymes [BR:
mmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCMA_13940
Messenger RNA biogenesis [BR:
mmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MYCMA_13940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
AAA_30
SLFN-g3_helicase
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIC73164
LinkDB
All DBs
Position
4625629..4629534
Genome browser
AA seq
1301 aa
AA seq
DB search
MSELSRSELRARLDGVTFRDASRLGRRLKNQRDTNPDALTKLAEQITAAEALIATRAAAV
PVITYPDLPVSAHREELAHAISAHQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGHTQ
PRRLAARTVAERIAEELGTPLGETVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPKRPDLKIIVTSATIEPQRFSAHFGNAPIVEV
SGRTYPVEIRYRPLEVPVPGTSRAKTEDEPDDPDHEIVRTELRDQTEAIADAVRELQNEP
PGDVLVFLSGEREIRDTSEALRDIVRAGTEVLPLYARLPTAEQHKVFASHTGRRVVLATN
VAETSLTVPGIRYVIDPGTARISRYSRRTKVQRLPIEPISQASAAQRSGRSGRTAPGICI
RLYSEQDFEARPRYTDPEILRTNLAAVILQMAALQLGDIENFPFLDPPDKRSIRDGVQLL
QELGAFSADGTITELGRRLARLPLDPRIGRMILQADAEGCVEEILVLAAALSIPDPRERP
ADREEAARQKHARFADDHSDFIAYLNLWRYLQDQRSQLSGSAFRRMCRNEFLHYLRIREW
QDLVGQLRSIARDLGIRESGERADPGRVHAALIAGLLSHIGLREGDTRDYSGARNTKFVL
APGSVLTKKPPRWVVVADLVETSRLFGRIAARVEPQAVERLAGDLVQRTYSEPHWDAERG
AVMAFERVTLYGLPLVPRRRVGYAQVDPELARELFIRHALVEGDWQSKHHFLRDNARLLR
ELSELEDKARRRDLLVGDDEIYALYAARIPADAVSARHFDAWWRKQRHKTPDLLTFTRDE
LLRTADAGADMPDTWRAGDVALPVTYRFEPGAADDGVSVHIPVEVLARLGGDEFAWHVPA
LREELVTSLIKSLPKDLRRNFVPAPDTARAVLRNLEPGSEPLVYALGRELHRLSGIRVPT
DAFDLDKVPPHLRVTFVVESADGAEVARDKNLNALQQRLAGSTRQAVAAAVAGQWERSGL
RAWPDDLPELPHTVEQVSGGHTVRGYPALADAGTSVDIHVFATESEQRAAMATGARRLLR
LSIPSPMKTVERGLDPRSRLLLSSNPDGSLSALLDDCADAATDLLAPVPVWTRAEFTALR
DRAAQSLAATTLDIVRRAEKVVQAWSELQVALPTKAPAAQSEAIADIRDQLDRLLDAGFV
AATGAARLTDLARYVNAIGKRLERLPQGVEADRERMHRVHAVEDAYDDLLRDLPAGRADD
PDIRDIAWFIEELRVSLWAQQLGTARAVSEQRILKAINAAR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaattgtcccgttctgagttgcgcgcgcgcctcgacggtgtgacctttcgcgac
gcgtcccgcctgggacgccgcctgaagaatcagcgtgacacaaacccggacgcgctgacg
aagctggccgagcagatcaccgccgccgaggcgctgatcgccacccgcgccgcggcggtt
ccggtcatcacgtatcccgatctgcccgtcagcgcgcatcgcgaagagctcgcccacgcg
atctccgcccatcaggtggtggttgtcgcgggtgcgacaggatcgggaaagaccacgcag
ctgcccaagatctgcctggaattggggcgcggaatccgcggcaccatcggccatacccag
ccacgcagactcgccgcacgcaccgtcgccgaacgcatcgccgaagagctgggcaccccg
ctcggtgaaaccgtcggctacacagtcagattcaccgatcaggccagcgatcgaacccta
gtcaagctcatgaccgacggcatcctgctggccgagatccagcgcgaccgccggctgctc
cgctacgacacgctcatcctggatgaggcacatgagcgcagcctcaatatcgactttcta
ctcggctacctgcgcgagctgttacccaagcggcctgacctgaagatcatcgtcacgtcg
gccaccattgagccacaacgtttttcggcgcattttggcaatgcgcccattgtcgaggtc
tcggggcggacctacccggtggaaatccggtatcggccgctggaagtgccggtgcccggc
acttccagggcgaagacggaggacgaacccgatgaccccgatcacgagatagtccgtacc
gagctacgcgaccagaccgaggccatcgccgatgcggtacgcgagctgcagaacgagccg
cccggcgacgttctggtgttcctgtccggcgaacgcgagattcgcgatacgtcagaagcg
ttgagagacatcgtccgcgccggcaccgaagtgctgccgctgtacgcccgactaccaact
gccgagcagcacaaggtctttgcatcgcacaccggcaggcgcgtggtgctggccaccaat
gtggccgagacctcgctcacggtgcctggcatccggtacgtcatcgaccccgggaccgca
cgcatctcccgctacagccgtcgcaccaaggtgcagcgcctgcccatcgagcccatctcc
caggcgtccgccgcgcagcgatcagggcggtccggacggaccgcaccgggcatctgtatc
cggctgtactccgagcaggatttcgaggcgcggccccgctacaccgatccggagattctg
cgcaccaaccttgccgccgtgattctgcagatggcggcgctgcagctcggcgatatcgag
aacttcccattcctggatccgcccgacaagcgcagcatccgcgacggcgtacagctgcta
caggaactcggcgcgttcagcgccgacggaaccatcaccgaactgggcaggcgcctggcg
cggcttccgctcgacccgcggatcggccggatgatcctgcaggccgacgccgagggatgc
gtcgaagagattctggtgctcgcggcggcgctatcgattcccgacccgcgggaacgccca
gcggaccgtgaggaggccgcgcggcagaagcatgccaggttcgccgatgaccattccgat
ttcatcgcctatctgaacctctggcgatatctgcaggatcagcgcagccaactgtccggc
agcgcgtttcgccgcatgtgccgcaacgagttcctgcactacctgcgcatccgtgaatgg
caggatctggtggggcaattgcgcagtatcgcccgcgatctcggtatccgggagtcgggt
gagcgcgccgacccggggcgggtccatgccgccctgatcgccgggctgctctcacacatc
ggtctgcgtgagggcgatacccgcgactattccggtgcgcgcaacaccaagttcgtgctc
gctcccggctcggtgctgaccaaaaagccgccacgctgggtggtggtggccgatttggtg
gaaaccagtcgtttgttcggtcgcatcgccgcacgtgtcgaaccgcaggccgtggaaagg
ctcgccggggatctggtccaaaggacctacagcgagccgcattgggatgccgagcgcgga
gccgtgatggcctttgaacgggtgactctctacggtctgcccctggtgccacgccgccgc
gtcggttacgcacaggtcgatcccgagctggcccgcgagttgttcatcaggcacgcgttg
gtggagggtgactggcagagcaagcatcactttctgcgtgacaacgcgcggctactgcgc
gagctgtccgaactggaagacaaggcccgccggcgcgacctactggtgggtgacgacgag
atctacgcgctctatgcggcacgcatccccgcggatgcggtgtcggcgaggcattttgac
gcgtggtggcgcaagcagcgtcataagacgccggacctgctgaccttcacgcgcgacgaa
ctgctacgcaccgcggatgcgggagccgatatgcccgacacctggcgtgcgggcgacgtc
gcgctccccgtgacgtatcggttcgagcccggcgctgccgacgacggcgtgtcggtacac
ataccggtggaagtactcgcgcgcctcggcggcgatgaatttgcctggcatgtaccggct
ttacgtgaagaactggtcacctcactcatcaagtcgctaccgaaagacctgcgccgcaat
ttcgttcccgcccccgacacggcgcgcgcggtgctgcggaatctcgaacccggatccgaa
ccattggtctacgcgttaggacgcgaactgcatcgactcagcggcattcgagtgcccacc
gacgcattcgacctggataaggttccgccacatctccgggtgacctttgtcgtcgaatcc
gccgatggcgccgaggtggcacgcgacaagaatctgaatgccctgcaacagcggctcgcg
ggttccacgcgtcaagccgttgctgcggcggtggcagggcagtgggagcgtagcggtctg
cgcgcctggcccgacgatctgcccgaattgccccacaccgtcgaacaagtcagcggcgga
cacaccgtacgcggataccccgcgctggccgacgccggcacctcggtggacattcacgtg
ttcgccaccgagtccgagcaacgggccgccatggccaccggcgcccgccgcctattgcgg
ctgtcgattccatcgcccatgaaaactgtggaacgaggcctcgatccgcgttcccgactg
ctgctctcgtccaatccggatggttcgctgtcggcgctgctggacgactgcgcggacgcc
gccacggatctgctggcgccggtgccagtgtggacgcgtgcggagttcaccgcgctacgg
gaccgcgccgcacagagtctggcggcgaccaccctcgacatcgtgcgacgcgccgagaag
gtggtgcaggcctggagtgagctgcaggtagcactgcccaccaaagcgcctgcggcgcaa
tccgaggcgattgccgacatacgcgaccagctcgacaggctgctggatgcggggtttgtc
gcggcgaccggagcggcacgcttgaccgacttggcccgctacgtcaacgcaatcggcaaa
cggctggagcggctacctcaaggtgtggaagcggaccgcgagcggatgcaccgcgtgcat
gccgttgaagacgcctatgacgacctgctgcgcgatctgcccgccgggcgtgccgacgat
cccgacatccgggatatcgcatggtttatcgaagagctgcgcgtgagcctgtgggcccaa
cagctcggtaccgcacgggccgtaagcgagcagcgaatccttaaggccatcaacgcggct
cgctga
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