KEGG   Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_2006
Entry
MYCMA_2006        CDS       T02177                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
mmv  Mycobacteroides abscessus subsp. massiliense GO 06
Brite
KEGG Orthology (KO) [BR:mmv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmv03400]
    MYCMA_2006
Enzymes [BR:mmv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MYCMA_2006
    5.6.2.6  RNA 3'-5' helicase
     MYCMA_2006
DNA repair and recombination proteins [BR:mmv03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    MYCMA_2006
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII AlkZ-like AAA_25 PhoH Lhr_WH DUF6406 AbiEi_4
Other DBs
NCBI-ProteinID: AFN64138
LinkDB
Position
complement(1236869..1241422)
AA seq 1517 aa
MSSEPGPLARFSAPTREWFTESFPAPTRAQSGAWQSIANGDNTLAIAPTGSGKTLAAFLW
AIDTLVQEKEAGAAAESRRLRGSRVLYVSPLKALAVDVERNLRAPLAGIARTATRMGLPE
PAITIGVRSGDTPAQRRRTLISSPPDILITTPESLYLMLTSAARETLDTVRTVIVDEVHA
VAGTKRGAHLALSLERLDERLSQPAQRIGLSATVKPAAEVARFLSGRTPATVVAPASRKT
FELSVVVPVSDMSAPESVPEPEASPDSPRGGATSLWPHVEQRIVDLIEAHRSSIVFANSR
RLAERLTARFNEIHAERLGLDLTPMPNPDVPGGPPAHIMGSGQTYGAAPLLARAHHGSVS
KEQRADIEDDLKTGRLKCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRIGRAGHQV
GEVSRGVLFPKHRTDLLGCAVTVRRMLDGDIETLQVPANPLDILAQHTVAACALEPMDVE
KWFDVVRRSAPFTSLPRSAFDAVLDLLSGKYPSTDFAELRPRVVYDRDEGTLTGRPGAQR
LAVTSGGAIPDRGLFTVYMYAGAEGEKPSRVGELDEEMVYESRPGDVISLGATSWRITEI
THERVVVVPAFGQPGRLPFWRGDSVGRPAELGIALGQLTGELASARDAEFDKRCAAMGFD
DFATGNLRTLLTDQLRSTGAVPTDTTLIVERFRDELGDWRIVLHCPYGLRVNGPLALAIS
DRLQQRYGVSESPTATDDGIVVRLPDTDDSPPGADLFVFDAAEIESIVTREVGGSALFAA
RFRECAARALLLPRRTPGRRSPLWQQRQRAAQLLDVARKHSDFPMVLEALRECLQDVYDI
GTLVRLMSGIEQRRIRIVEVQTDTPSPFAAAQLFSYIGGFMYDEDRPLAERRAAALSLDT
NLLAELMGRVELRELLDPAVIDATEHQLQHLAEERKARDAEALADLFRLLGPLTAEEIAQ
RSAGPGAAWLDELVSARRVVGTSYGQRNWWAAVEDVARLRDALGVPVPPGVPAAFTDAAI
DPLGELLSRYARTHGPFTTGEAAQRFGLGVRVAADTLSAMAARGQLVRGEFTSDATDSEQ
WCDAEVLRILRRRSLAALRAQVEPVGTSAFARFLPDWQYLDSNLRGIDGVATVIEQLAGV
PIPASAWEPLILARRIRDYSPQMLDELLASGDTVWSGHGSISAQDGWIALHPSGVAPATL
AAAETVILDDAHRAILDSLTAGGGYFFRQFGSGATRAALWDLVWAGRVTGDTFAPVRALL
GTSTTSRTAHRNRRAPRLRAYTPITTAAPVDPAVAGRWSMLPERLADGTERSHIQAELLL
GRYGVVTKGSVAAESVAGGFAWLYKVLSTFEDNGRCRRGYFVESLGGAQFASPATVDRLR
EYLDPVDDARKPYRATVLAATDPANPYGAALVWPQATSESGHRPGRKAGALAVLVDGDLA
LYIERGGKSLLSFVTDPTVLHAAALGTMELVRDGGLDGLVIERVDGRSVFDVGESAVVAA
LMEAGFARTPRGLRIRR
NT seq 4554 nt   +upstreamnt  +downstreamnt
atgagcagcgagcccggtccactcgcccggttctcggcgcccacccgggaatggttcacc
gaatcattcccggcgcccacgcgggcacagtccggcgcgtggcagtccatcgccaacggc
gataacaccctcgccatcgcacccaccgggtccggcaagaccctcgcggccttcctgtgg
gccatcgacaccctggtgcaggagaaggaagccggggctgcggctgaatctcgccgactt
cgcgggtccagggtcctgtacgtgtcgccactcaaggcacttgccgtcgacgtcgagcgg
aacctgcgcgccccgctggccggcattgcccgcaccgcgacacggatgggcctccccgaa
ccagcgatcaccatcggcgtgcgctccggcgatacacccgcgcagcgccgccgcacgttg
atctcctcacccccggacattctcatcaccacacccgagtcgctctacttgatgctgacc
tccgccgcacgcgagaccctggacacggtgcggaccgtcattgtcgacgaggtgcacgcg
gtggccggcaccaagcggggggcgcatctggcgctctcactggagcgactggacgaacgg
ctttctcagccggcacaacgaattggcctttcggcgacggtgaagcccgccgcagaagtc
gcgcggtttctgtccggccgcactcccgccactgttgtcgctccggcgagccgcaagacc
ttcgaactgtcggtcgtcgtgcccgtctccgatatgagtgctcccgagagtgttccggag
ccggaagccagccctgattcccctcggggcggcgcgacctccctatggcctcatgtcgaa
caacgcatcgtcgatctcatcgaggcgcaccggtcgagcatcgtcttcgccaactcacgc
cgcctcgctgagcggcttaccgcccggttcaacgagattcacgctgagcgcctcggcctc
gacctcactcccatgcccaatcccgacgtaccgggagggccgccggcgcacatcatgggc
agtggccagacctacggcgcggctcccttgctggcgagggcgcatcacggctcggtaagc
aaggaacagcgcgccgacatcgaagatgatctgaagaccgggcggctcaaatgcgtggtg
gccaccagcagcctggaactcgggatcgatatgggcgccgtggatctggtggtccaggtg
gaggcgccgccgtcggtggccagtggactgcagcggatcggccgcgccgggcaccaggtg
ggcgaggtgtctcggggtgtgctgttccccaagcaccgcaccgatttgttgggctgcgcg
gtcaccgtgcgacgcatgctcgacggcgatatcgagacgctgcaggtgcccgccaacccg
ctcgacatcctggcccagcacacggtggcagcgtgtgctctcgaacccatggatgtcgag
aagtggttcgatgtggtcagacgaagcgcgcccttcacctccttaccgcgcagcgcattt
gatgcggttctcgacctactcagcggcaagtacccctctaccgatttcgccgagttacga
ccgcgcgtcgtgtacgacagagacgaaggaacactcaccggacggcccggcgcacaacgg
ctggcagtcacctccggaggtgcgatacccgatcgcggtttgttcacggtgtacatgtat
gcgggcgctgagggcgaaaagccttcgcgggtaggcgaactcgacgaggaaatggtctac
gaatcacggccaggagacgtgatttcgctgggcgcgaccagctggcgtatcaccgagatc
acgcatgagcgggtggtggtggtcccggcgttcggccagccgggccgactgcccttctgg
cgcggcgactcggtagggcgccccgccgagctcggcatcgcgctgggccagctcaccggt
gagctggcctccgcacgcgatgccgagtttgacaagcgctgcgccgcgatgggattcgac
gactttgcgacgggtaacctacgtacgctattgacagatcagctgcggtcgacgggcgct
gtccccaccgataccacgctgatcgtcgagcggttccgcgacgagcttggcgactggcgc
atcgtgctgcactgcccctatgggttacgggtcaacggcccgctggcgctggcgatctcc
gaccggctccagcagcgctacggtgtcagcgagtcacccaccgccaccgacgacggcatc
gtggtgcgcctgcccgataccgatgacagcccacccggggcagatcttttcgtcttcgac
gccgcggagatcgagtcgatcgtgacacgggaggtcggcgggtcggcattgttcgccgca
cggttccgcgaatgcgcggcacgcgccctgctgctgccccgccgcacacccggacgccga
tcgccgctgtggcagcagcggcagcgggccgcccaactgctcgacgtcgcgcgtaaacat
tccgatttcccgatggtcctggaggcgttgcgcgaatgcctgcaagacgtgtacgacatc
ggcactctggtgcgattgatgtcgggtatcgagcaacggcgaatccggatcgtcgaggta
cagaccgacacgccctcacccttcgctgccgcccaattattcagctacatcggcgggttc
atgtacgacgaggatcgtccgctggccgagcgccgtgcggcggccctctcgctggacacc
aatctgctggccgagctcatgggccgcgtggaactgcgtgagctgctcgacccggcggtc
atcgacgccaccgaacaccaactgcagcacctcgccgaagagcgcaaggcccgcgacgcc
gaagccctggccgatctgttccggctactgggccccctcaccgccgaagagatcgcgcag
cgcagcgccgggcccggagccgcctggctggacgaactcgtctccgcgcggagggtggtc
gggacaagctacggacaacgcaactggtgggcggcagtggaggacgtggcgcgtttacgt
gacgcgctcggggtcccggtgcctcccggtgtgccggcggcattcaccgacgcggccatc
gatccgttaggagaactgctaagtcgatacgcccggacgcatggcccgttcaccaccgga
gaggccgcgcaacgttttggcctgggggtgcgcgtggccgcggacacgctctcggcaatg
gcggcgcgcggccagctggtgcgcggtgaattcacctccgatgcgaccgattccgagcag
tggtgcgatgcggaggtgcttcgtattctgcgcaggcggtccctggccgcgctgcgcgca
caggtggagccggtcggcacctcggcgttcgcacggttcctgcccgattggcagtacctg
gattcgaatctgcggggcatcgacggagtggccaccgtgatcgagcagctcgccggggtg
ccgattcccgcgtcggcgtgggagccgctgatcctggcacgacgcatccgtgactactca
ccccagatgctcgacgaactgctggcctcgggcgacacggtgtggtcgggacacggctcc
atctcggcacaggatggctggatcgcgctgcacccgagtggcgttgcgcccgccacgcta
gccgctgccgaaacggtgatactcgatgacgcccatcgagcgatcctggacagcctcact
gcgggcggcgggtacttcttccgccagttcggttcgggtgctacgagagcagcgctatgg
gacttggtgtgggcggggcgagtgaccggagataccttcgcaccggtgcgggcactgctg
ggcaccagcaccacatcgcgcaccgcgcaccgaaaccggcgagcaccgaggctgcgcgcc
tacaccccgatcaccaccgccgcgcccgttgatcccgcagtcgccggacgctggtcgatg
cttcccgagaggctcgccgacggtaccgaacgttcacacatacaggccgagctgctgttg
ggcagatacggcgtggtgaccaagggtagcgtcgccgccgagagcgtcgcgggcggtttc
gcctggctgtacaaggttctttcgacattcgaggacaacgggcgctgtcgccgcggctat
ttcgtcgaatcgctgggcggcgcgcagttcgcctctcccgcgaccgtcgacaggcttcgt
gagtacctcgatcccgtcgatgacgcacgcaagccgtatcgggcaacagtgctggccgcg
accgatccggccaatccctatggcgcggcactggtatggccgcaggcgacatccgaatcc
ggtcaccgtccgggcaggaaagcaggggctcttgcggtgcttgtcgacggcgacctcgcc
ctctacatcgagcgaggcggcaagtcgctgctgagcttcgtgaccgaccccacggtgctg
cacgccgcggcattgggcaccatggagttggtgcgcgacggcggactcgatggcctggtg
atcgaaagagtcgacggcagatcggtcttcgatgtcggcgagtccgcggtcgtcgcggca
ctgatggaggccggattcgcccggacgccgagaggattgaggattcgccgatga

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