Marinomonas sp. MWYL1: Mmwyl1_0198
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Entry
Mmwyl1_0198 CDS
T00567
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmw
Marinomonas sp. MWYL1
Pathway
mmw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mmwyl1_0198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmw03019
]
Mmwyl1_0198
Enzymes [BR:
mmw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mmwyl1_0198
Messenger RNA biogenesis [BR:
mmw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mmwyl1_0198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABR69140
UniProt:
A6VRR1
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All DBs
Position
complement(228762..230018)
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AA seq
418 aa
AA seq
DB search
MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL
HQILQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDA
LRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSR
QTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAVDQDRKSALLSFLIG
SKNWQQVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRALVA
TDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLTDIE
KLVGEQFVPQWLPGFEPDLNKVNNAQKKREPSKKELRAKALGIHPSKDKKPNKRRRSK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcgtctttaggacttcatcaagacattattcagcaagtaacagagctgggg
tatacaacaccaactcccattcaacttgccgctattccagccgtcttggcgaaaaaagat
cttatggccggagcgcaaactggtacagggaaaaccgccgcttttgctttacctctgtta
caccaaattctacaagctaaagactcaaatactactaaaggcattcaagtgctagtactc
acacctactcgcgaattggcgcaacaagttcatgctagcttccttaaatacagcgcaaaa
ctaccgatccagtcggttgtcgcttatggtggcgcaagtataaatatgcaactcgatgca
ttgagacaaggctgtgatgtgttggttgcaaccccaggtcgcttacttgaactcatcatg
aaaaacctgattgatttaagtaagttacaaaccctagtattagatgaagcagaccgcatg
ttagacatggggtttattattgatattcaaagaatattgaaaaaactgcctaaatctcga
caaactttatttttctccgccaccttcaatgacgaaattttcgccctcagcaaaactcta
ttaaaagacccacaattaatcgaagtgaacagtcgaaataccacggcaactcaggtcgag
caaacgatttacgcggtagatcaagatcgaaaaagtgccctactgtcgttcctcatagga
tctaaaaactggcaacaagtacttatttttactcgcactaaacaaggcgctgacgagcta
gccaaagaaatggaaaaagatggtattgccactcaatccatccatggagacaaatcccaa
ggcgctcgtgatcgcgtattggcagactttaaagctggcaaagtacgtgcacttgtagca
acagatgttgctgctagaggtatagacatagagcaattacaatatgtcgtgaatcacgaa
ttgccttacaacgcagaagactatattcaccgcatcggccgaactggtcgtgctggctca
acaggcctcgccatctccttagtttccgaaaaagagcgctatctactaacagacattgaa
aaactagttggtgagcaatttgttcctcagtggctaccaggttttgaaccagacttaaac
aaagtaaacaacgcccagaaaaagcgcgagccatctaaaaaagaattaagagcaaaagcg
ctaggcatacacccttcaaaagacaaaaaaccaaataaaagacgccgttcaaaataa
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