Miniopterus natalensis (Natal long-fingered bat): 107535340
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Entry
107535340 CDS
T05883
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mna
Miniopterus natalensis (Natal long-fingered bat)
Pathway
mna03013
Nucleocytoplasmic transport
mna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107535340 (UPF1)
03015 mRNA surveillance pathway
107535340 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mna03019
]
107535340 (UPF1)
Enzymes [BR:
mna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107535340 (UPF1)
5.6.2.5 RNA 5'-3' helicase
107535340 (UPF1)
Messenger RNA biogenesis [BR:
mna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107535340 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107535340 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107535340
NCBI-ProteinID:
XP_016066239
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGPGVPV
GAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttcgcagacgctcactttcctggacaccgaggag
gccgagcttcttggcgccgatacgcaaggctctgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggtggcggcccaggggtccctgtc
ggcgcgggtgcgggcgctgcggccggacagcttgatgcccaggttggaggacctgagggc
atcctgcagaatggggccgtggatgacagcgtggccaagaccagccagttgctggccgag
ttgaacttcgaagaagatgaagaggatacttattacacaaaggacctaccagtacatgcc
tgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaataccagcaaaaag
tggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgactctacacaaggatgggccccttggggagacggtcctggag
tgttacaactgtggttgtcgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcagtggtggtactgttgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcacagtggcagcccctgatccaggatcgctgcttcctgtcctggctg
gtcaagatcccttcagagcaggagcagcttcgggcccggcagatcactgcccagcagatc
aacaagctggaggagctgtggaaggagaatccttctgccaccttggaggacctggagaag
ccaggggtggatgaggagccgcagcacgtcctcctgcggtacgaggacgcctaccagtac
caaaatatattcggacctctggttaagttggaggccgactatgacaagaagctgaaagag
tcacagactcaagataacatcacagtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttacccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcc
cccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatt
gccattgagctgcggagcagtgtgggtgcacccgtggaggtgacacataacttccaggtg
gatttcgtgtggaagtccacctcattcgacaggatgcagagtgcactaaagacctttgct
gtggatgagacctctgtgtcaggctatatctaccacaaactgctcggccatgaggtggag
gacgtgatcatcaagtgccagctgcccaaacgcttcactgcacaggggctgcctgatctt
aatcactctcaggtttacgccgtgaagactgtgctgcagagaccactgagcctgatccag
ggaccaccaggaacagggaagacagtgacctcagccaccattgtctaccacctggcacga
cagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggatcagctgact
gagaagatccaccagactggactgaaagtcgtgcggctctgtgctaagagtcgtgaggcc
atcgactccccggtgtcatttttggccctgcacaaccagatcaggaacatggatagcatg
ccagagctccagaagctgcaacagctgaaggacgagactggagagctgtcgtctgctgat
gagaagcggtaccgagcactgaagcgcacagctgaaagggagctgctcatgaatgcggac
gtcatctgctgcacatgtgtgggtgcaggggaccctaggctcgccaagatgcagttccgc
tctattcttattgatgagagcacccaggctactgagccagagtgcatggtccctgtggtc
ctcggagccaagcagctgatccttgtgggtgaccactgccagctgggccctgtggtgatg
tgcaagaaggcagccaaggccgggctgtctcagtcgctgttcgagcgcctggtggtgctg
ggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactcagtgccttc
ccatccaacatcttctatgagggctctctgcagaacggtgtcactgcagcggatcgagtg
aagaaggggtttgacttccagtggccccaacctgataagccgatgttcttctatgtgacc
cagggacaggaggagatcgccagctcgggtacctcttacctaaacaggacggaggctgca
aatgtagaaaagatcaccacgaagctgctgaaggcgggtgccaagccagaccagattggc
atcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagttgtaccaggaggtggagattgccagtgtggatgcattccagggg
cgtgaaaaggacttcattatcctctcctgtgtgcgagccaacgagcatcaaggcatcggg
tttttaaatgaccccaggcggcttaatgtggccctgacccgagcaagatacggggtcatc
attgtgggcaaccccaaggccctgtccaagcagccactgtggaaccacctgctgaattac
tacaaggagcagaaggtgctggtggaggggcccctgaataacctgcgggagagcctcatg
cagttcagcaagccccggaagttggtcaacaccatcaaccctggagcccgcttcatgacc
acagccatgtatgatgcccgggaggccatcatcccaggatcagtctatgatcggagcagc
cagggccggccctcgaacatgtacttccagacccacgaccagctcggcatgatcagtgcc
ggccccagccacgtggccgccatgaacattcccatcccattcaacctggtcatgccaccc
atgccacctccagggtactttggacaggctaatgggccagctgcaggccgaggcactcca
aaaggcaagacgggtcgtggtgggcgccagaagaaccgctttggccttcctgggcccagc
cagacaaacctgcccagcagtcaggccagccaggacgtggcatcacagcccttctctcag
ggggccctgacacagggctacatctccatgagccaaccctcccagatgagccagcctggt
ctctcccagcctgagctgtcccaggacagttaccttggtgatgagtttaaatcccagatt
gatgtcgcgctgtcgcaagactccacgtaccagggggagcgggcataccagcatggtgga
gtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
