Miniopterus natalensis (Natal long-fingered bat): 107537977
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Entry
107537977 CDS
T05883
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mna
Miniopterus natalensis (Natal long-fingered bat)
Pathway
mna03008
Ribosome biogenesis in eukaryotes
mna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mna00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107537977 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
107537977 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mna03019
]
107537977 (XRN1)
03009 Ribosome biogenesis [BR:
mna03009
]
107537977 (XRN1)
03016 Transfer RNA biogenesis [BR:
mna03016
]
107537977 (XRN1)
03036 Chromosome and associated proteins [BR:
mna03036
]
107537977 (XRN1)
Messenger RNA biogenesis [BR:
mna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107537977 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
107537977 (XRN1)
Ribosome biogenesis [BR:
mna03009
]
Eukaryotic type
Pre-60S particles
RNases
107537977 (XRN1)
Transfer RNA biogenesis [BR:
mna03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107537977 (XRN1)
Chromosome and associated proteins [BR:
mna03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107537977 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
107537977
NCBI-ProteinID:
XP_016069581
LinkDB
All DBs
Position
Unknown
AA seq
1721 aa
AA seq
DB search
MIRLCFRKMAKLVREKTGSKQSSWNTDVLKLRLGIKTEKKMRSPETMGMDNRIPEFDNLY
LDMNGIIHQCSHPNDDDVHFRISDDKIFTDVFHYLEVLFRIIKPRKVFFMAVDGVAPRAK
MNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNM
KISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLG
LTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKERISFKY
DIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNL
PRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARSYREKRKPKGQ
ENSICWAALDKNREEAVTSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDIVSDDFLA
DQAACYIQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQ
LLAVLPAASKNLLPTCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKR
LLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFTYPSPWPEKFPAIERCRARYKIIS
LDAWHVDISKNKITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEIL
VNAESDELSIENIASSVLGKSVFVNWPHLEEARVVGVSDGETKFYLEEPPGIQKLYLGRT
APPSKVVHLGDKEQSNWTKEVQGISEYYLRRKGIIINETPAVVYAQLLTGRKYQINQNGE
VRLEKQWSKQVLPFVYQTIVKDIRAFDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEV
QDSGDVITEGRIRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTG
SIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAAEQLLAEYIER
APELFSYIAKNSQEDVFYEDDVWPGESENGAEKVQEIITWLKGHPVSTLSRSSCDLQILD
AAIVEKIEEEVGKYKQRKNSKKVRVTVKPHLLYRPLQQQHGVTPDRDAEFRLFDRVVNVR
EDFSVPVGLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLS
HGSRSETGNQKLTAIVKPQPAVNHCSSNPPVSAGRLGGLNHSPQSLFVPTQVPTKDDDEF
CNIWQSLQGSGKVSHFHPTLQEKGAVLPQEISQVTQHHKSGLSDSSVKCQQRKHEPHRKF
KEECKIPKTESWSQKMSNSQPNTGFENFLASLTISKENEVQSSHHEEPPSEEHLSPQSFA
MKGTRMLKEILKIDASDPVDHKSEMKQFGPEVTVSSNRRGECGPSSQPKQGKKLTSYMNK
PHSSSEYHPVRSVDSVCWPASSQIPSVSTPAAELSRICSLVGMPQPDFSFLRTPQTMVVC
QVKLPNGLLVHGPQCRSENEAREKAALLALQQLGSLGVNFPLPPPIFANYPPAVPPGPVP
PVFPQPAVNILPSSSPLFGSMPWGPAVPVSGKPFPHTSYSGTMPVAGGAAGGVHNQFIPL
QVTKKRVANKKNFENKEAQSSQATPLQTSQPGPSSAPRGMPPESPSAPIKSSPTAQPAPS
LQAEAASQGPSAAHRKPAAGSASRRKSRKLAVSFGLSKPSE
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgatcagattatgttttagaaagatggctaaactggtgagagagaaaactggaagcaag
cagtccagttggaacactgacgtccttaaactgagactgggaatcaagacggagaaaaag
atgagatcccctgaaacaatgggaatggacaacaggattcctgagtttgacaacttgtac
ttggacatgaatggaatcatacatcagtgttcccaccctaatgatgacgacgttcacttc
agaatctcagatgataagatcttcactgatgtttttcattacttggaggtgttgtttcgc
atcattaaacccaggaaagtgtttttcatggcagtcgatggtgtggctcctcgggcaaaa
atgaaccagcagcggggaaggcgttttaggtcagcaaaggaggcagaagacaaaattaaa
aaggcaatagaaaaaggagagacccttcctacagaggccagatttgattccaactgcatt
acaccagggactgaattcatggccagattacatgaacacctgaagtattttgtaaatatg
aaaatttctacggacaagtcatggcaaggagttaccatctatttctcaggccatgagact
cctggagaaggagaacataaaatcatggaatttatcagatccgagaaagcaaagccagat
catgatccaaacaccagacactgtctctatggtttagatgctgacttgatcatgcttgga
ttaacaagccacgaggcacatttctctcttttaagagaagaggttcggtttggtggaaaa
aagacacagagagtatgtgcaccagaagaaaccacatttcacctcctacatttgtctttg
atgagagagtatattgactatgagttttcagtgttaaaagagaggatctcatttaaatat
gatattgaaaggataatagatgactggattttgatggggtttcttgttggcaatgatttt
atccctcacctacctcatttacatatcaatcatgatgcactgccccttctttatggaaca
tacattaccatcctgccagaacttgggggttatattaatgaaagtggccatctcaactta
cctcgatttgagaaataccttgtgaaattatcagattttgatcgggagcacttcagtgaa
gtttttgtggacctcaagtggtttgaaagcaaagtaggaaacaagtacctcaatgaagca
gcaggagttgcagcggaagaagccaggagctacagggaaaagagaaaaccaaagggccag
gaaaactccatatgttgggctgctttagataaaaatagagaagaagcggtaacttctaag
gacaatttagaagatgagactgaagatgatgacctatttgaaaccgagtttcgacaatat
aaaagaacatattacatgacaaagatgggagttgacatagtgtctgatgactttctggct
gatcaagctgcatgttatattcaggccatacagtggattttgcactattactatcatgga
gttcagtcctggagctggtattacccttaccattatgcgcctttcctgtctgatatccgg
aacatcagcacactcaaaatccattttgaactaggaaaaccttttaagccatttgagcag
cttcttgctgtacttccagctgctagcaaaaatttacttcctacatgctaccagcatttg
atgaccagtgaggactcacccattatagaatattatccacctgattttaaaactgaccta
aatgggaaacaacaggaatgggaagctgtggtactaataccttttattgatgagaagcga
ttgttggaagccatggagacatgtaaccactccctcaaaaaagaagagaggaaaagaaac
caacatagtgagtgcttaatgtgctggtatgatagagacacagagttcacctacccctct
ccatggccagagaagttccctgccatagaacgatgtcgtgcaaggtataaaataatatca
ttagatgcttggcatgtagacataagcaagaacaaaataaccagggttgaccagaaggct
ttatatttctgtggatttcctactctgaaacacatcaaacacaaattttttttgaagaaa
agcggggttcaagtattccagcagagcagtcgtggagaaaacatgatgttggaaatctta
gtgaatgcagaatccgatgagcttagtatagaaaatatagcttcatcagtgcttgggaag
tctgtctttgttaactggcctcatcttgaagaagctagagttgttggtgtatcagatgga
gaaaccaagttttacttggaagaacctccaggcatacagaagctttatctgggaagaact
gctccaccatctaaagtggttcatcttggagacaaggaacaatctaactggacgaaagaa
gtacaaggaatttcagaatactacctgagaagaaaaggaataataataaatgaaacacct
gcagttgtatatgctcagttactcacaggtcgaaaatatcaaataaatcaaaatggtgaa
gttcgtctagagaaacagtggtcaaaacaagttcttccttttgtttatcaaactattgtc
aaggacatccgagcttttgattcccgtttctccaatatcaaaacattggatgacttgttt
cctcctagaagtatggtctttatgcttggaaccccctattatggctgtactggagaagtt
caggattcaggggatgtgattacagaaggtaggattcgtgtggttttcagcattccatgt
gagcccaatcttgatgctttaatacagaaccagcataaatattctataaagtacaaccca
ggatatgtgttggccagtcgccttggagtgagtggataccttgtttcaaggtttacagga
agtatttttattggaagaggatctaggagaaaccctcatggagaccataaagcaaatgtg
ggtttgaatctcaagttcaacaaaaaaaatgaggaggttccaggatatactaagaaagtt
ggaaacgagtggatgtattcatctgctgcagaacaacttcttgcagagtacatagagaga
gctccagaactatttagttatatagccaaaaatagccaagaggatgtgttctatgaagac
gacgtttggccgggagaaagtgagaatggtgccgagaaagttcaagaaattattacctgg
ctaaagggacatcctgtgagcacattgtctcgctcttcctgtgatttacaaattctggat
gcagctattgtagaaaaaattgaggaagaagtcggaaagtacaagcaaagaaagaatagt
aagaaggtgcgagtgacagtgaagccccatttgctatacagacctttgcagcagcagcac
ggagtcactcctgaccgggatgcagagttccggctcttcgaccgcgttgtgaatgtgagg
gaggacttctcggtgcccgtaggccttcggggcaccatcataggaattaaaggagctaac
agagaagccgatgttctatttgaagtattatttgatgaagaatttcctggaggcttaaca
ataaggtgctcacctggtaggggttatcgactgccaacaagtgccttggtgaacctttct
catgggagtcgctctgagactggaaatcagaagttgaccgccattgtgaaaccacagcca
gctgtgaatcactgtagctcgaatccaccggtttcagctgggcgtttgggaggcttaaac
cattcccctcagtctctctttgttcctacacaagtacctactaaagacgatgatgaattt
tgcaacatttggcagtccttacagggatctggaaaggtttcgcactttcatccaactcta
caagagaagggtgcagttctacctcaagaaataagtcaagtaactcaacatcataaatct
ggcttaagtgacagcagtgttaaatgtcagcagagaaaacatgagcctcacagaaaattt
aaagaagagtgtaagatccctaaaactgagagttggtcacagaaaatgtcaaacagccag
cctaacactggatttgagaactttttagcatccttgactatctccaaagaaaacgaagtc
cagtcctctcatcatgaagagccccccagtgaagaacatttgtcaccgcagtcatttgct
atgaagggaacacggatgcttaaagaaattctaaaaattgatgcctctgaccctgtggac
cacaagagcgaaatgaagcagtttggtcctgaagtcactgtctcctctaacaggaggggc
gaatgtggaccttcctcacagccgaaacagggtaagaagttaacatcttatatgaacaag
cctcacagttctagtgagtaccatcctgttcggtctgtagacagtgtgtgctggcctgct
tccagccagatcccttctgtgtccacaccagcagctgaactctctagaatctgttccctt
gttggaatgccacaaccagatttctcttttcttagaacaccacagacaatggtagtttgc
caggtaaagctgcccaacggcttactagtgcacgggccacagtgccgctctgaaaacgaa
gcccgggaaaaggctgcacttttggctctgcaacagttgggctccttaggagtgaatttc
cctttgccgccaccgatatttgcgaattatcctcctgctgtacctcctggacccgttcct
ccagtgtttcctcagcctgctgttaatatactgccttcatcatctcctctctttggctcg
atgccatggggaccagcagtgccagtgtccggaaagccctttcctcacacttcgtattcc
gggaccatgcccgtggccgggggagcggcaggtggtgtgcacaatcagttcatacctcta
caggttactaaaaaaagggttgccaacaaaaagaactttgagaataaggaggcccagagt
tctcaagccaccccacttcagactagccagccagggccttccagcgcccccagagggatg
cccccggagagcccgtcagctcccatcaagtcctccccaacggcccagcccgcaccttcg
cttcaggccgaagctgcctctcagggccccagtgcagctcaccgcaagccagcagcaggc
tctgcctcaaggagaaaatccagaaagctggctgtcagttttggcctttccaaaccttct
gaataa
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integrated database retrieval system
