Merops nubicus (carmine bee-eater): 103769650
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Entry
103769650 CDS
T08417
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mnb
Merops nubicus (carmine bee-eater)
Pathway
mnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103769650 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnb03019
]
103769650 (SKIV2L2)
03041 Spliceosome [BR:
mnb03041
]
103769650 (SKIV2L2)
03009 Ribosome biogenesis [BR:
mnb03009
]
103769650 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
mnb03016
]
103769650 (SKIV2L2)
Enzymes [BR:
mnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103769650 (SKIV2L2)
Messenger RNA biogenesis [BR:
mnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103769650 (SKIV2L2)
Spliceosome [BR:
mnb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103769650 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
103769650 (SKIV2L2)
Ribosome biogenesis [BR:
mnb03009
]
Eukaryotic type
Pre-60S particles
Helicases
103769650 (SKIV2L2)
Transfer RNA biogenesis [BR:
mnb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103769650 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103769650
NCBI-ProteinID:
XP_008935115
LinkDB
All DBs
Position
Unknown
AA seq
780 aa
AA seq
DB search
KRSEEKSPVAATGKPKREAEVGTAEDAVLAKKPKLEDVISEDANLADLMPQVKVQAVETV
EGCTHEVALPADEEFTGLKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGK
TVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVM
TTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIP
NARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAM
QVLRDAGDLAKGDQKGRKGGIKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMT
KLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGVGIHHGGLLPILKETI
EILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRR
GMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRTIPDIVERVNNLEGQYNKIAIPNEENVVIYYKIRQQLAKLAKDIEEYIHKP
KYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESL
KNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQ
KRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETIYKLCEKKAQ
NT seq
2341 nt
NT seq
+upstream
nt +downstream
nt
aaaacggtcagaggaaaaatctccagtagctgcaacagggaagcctaaaagagaagctga
ggttggtactgctgaagatgctgttttggcaaagaagccaaaattggaagatgttatatc
agaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgt
tgaaggttgtacgcatgaggttgcacttccagcagatgaagagttcacaggtctgaagcc
aaggactggaaaagctgcaaaggaatatccatttattctggatgcctttcagagagaagc
aattctttgtgtagataataaccagtctgtgttagtgtcggctcatacgtcagctggtaa
aactgtttgtgcagagtatgcaattgccctggctctgagggagaagcagcgtgtgatatt
tacgagtccaattaaagccttgagtaatcagaagtaccgtgagatgtatgaagaatttca
ggatgttggtttgatgactggagacgtcactattaatcctacagcttcttgtctggtaat
gacaactgagattttgaggagtatgctctacagaggttccgaggttatgcgagaagttgc
gtgggttatttttgatgaaatccactacatgagagattcagaacgtggtgttgtttggga
agagacaatcattttgctccctgacaatgttcattacgtgttcctttctgcaactattcc
aaatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgat
ttatactgactatcgacccactccactgcagcattatatattcccagcaggaggagatgg
actccatctggttgttgatgaaaatggagatttcagagaagacaattttaatacagccat
gcaagtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggagg
aataaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttcca
gcctgtgattattttcagcttcagtaaaaaagactgtgaagcctatgcacttcagatgac
aaagttagatttcaatacagatgaggagaaaaagatggttgaagaagtgttcaataatgc
aattgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgttcttcctct
tctgaagcgaggagttggtatccatcatggcggtctgctgcctatcttaaaagaaaccat
agaaattcttttctctgaggggctaataaaggccttatttgcaacggagacttttgctat
gggaattaatatgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaa
agatttccgatggatatcttcaggtgaatacattcaaatgtcaggtcgtgcaggacgccg
aggcatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaat
tggcaagcagcttttgaagggttcagctgatcctttgaacagtgcattccacctgacata
caacatggtactgaacttgcttcgagtggaagaaattaaccctgaatacatgttagagaa
atccttctatcaatttcaacattacagaactattccagatatagtagaaagagtgaataa
tttagaaggacaatacaacaaaatagcaattcccaatgaagaaaatgtggtcatatacta
caaaatccgacagcagcttgcaaaactggctaaagacattgaagaatatattcacaaacc
aaagtattgcttgccctttctgcagccaggaagactggttaaggtgaagaatgaaggtga
tgactttgggtggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattc
tggtgaactggacccattgtatgtagttgaagtgctactgcactgcagcaaagagagttt
gaaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgca
ggttgttcctgttctggttcatcttctctcagctatcagcagtgtccgactttacatacc
aaaagacctgaggcctattgacaacaggcagagtgtgttaaaatcgatacaagaagtaca
gaagcgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaaga
tcaaggactgaaaaaagtaatccaaaaagtagaggcctttgagcacaggatgtattcaca
ccctcttcacaatgatcccaacttggaaaccatatacaaactttgtgaaaaaaaagcaca
g
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