Merops nubicus (carmine bee-eater): 103774524
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Entry
103774524 CDS
T08417
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mnb
Merops nubicus (carmine bee-eater)
Pathway
mnb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103774524 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnb03021
]
103774524 (PCF11)
03019 Messenger RNA biogenesis [BR:
mnb03019
]
103774524 (PCF11)
Transcription machinery [BR:
mnb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103774524 (PCF11)
Messenger RNA biogenesis [BR:
mnb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103774524 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
103774524
NCBI-ProteinID:
XP_008940184
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAVTSGASTPPSVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHLTVKPPHQTPVQSEKNRPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQSH
RKEFPPNTTSQSDTKANKTTQAEKQNTAKQEKLKVSEKTQKKELDQSEAKSKSPSPLKNK
LPSAKDAKTQECESTKVSEISKRDPRLKRHLQDKSEGKEDEVKEKRRSTEKKEKEEHKTG
EHRAAGSRNKVINGAVQKQDTATEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRR
ERRSPKRRLRSLSPTLSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQEVRDPR
RAKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEETKNSQQNEEAVGK
SPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSGE
ITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLK
RTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVPFDRKEPFAERSRRHSP
VSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGETDEFRDALRQQGKSTT
EFQKIDGEAVCRFDNREERQLLGQAGVREESRSPFSERFKRARYEDPEKAPFPESPGSRF
GGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGPGSPFVDGPAAGASSRIDGPPGQAAM
RFEGPLVGAGASQFDGPLAGAAGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFEGP
LGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQPG
GGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPSG
GGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGCH
AAGFDGQPGQLSLLQRFEGIHGQPGPRFERVPGQQAQPRFDTAIPQRFDGPHQPASRFDL
PLGLQGGRFENVANHPASRLEMSPYGQGGPFVDHPGQGFNGPAHGMQFQRPDLFDGSPGP
SFNGPAGPGAQNFPLRAGGHYFEEKGLQGPQYGGFNSMPMGGSQVSLMSAQPGPYGQGQQ
YLPNPGSFVQNPAGTLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSA
QPAAEEEDDDQNEDQNVPDLTNFVVEELRQRFDSVINRLYTGIQCYSCGMRFTTSQTDVY
ADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVL
KTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSC
YEDYQKTSSFDCTPSPSKTPVENPLNIVLNIVKQETPEACDSPKVKEEPDDTPTACAEES
TPASTDIKTEPDESVKMN
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaacgtgggaagagagtatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
gctgcacctacctctgctgtcacttctggtgcctctactcctccatctgttcctgaaata
caaaagaatttgacacaggaacaactgataaggcaacaattgcttgcaaagcaaaagcag
ttgctagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaagggtcatctactatagcttcagttccagcaccttcc
aagcaacacatgtctcccacacctcatctaacagttaagccacctcatcagactcctgtg
caatctgaaaaaaatagaccatccccaagtcctccacttcatgatatcaaaatagtgaat
agggatcctcgactaaacaggatggctcaacattcttctcatgctaaagatcagtctcat
aggaaagaatttccaccaaacacgaccagtcagtctgataccaaggcaaacaaaacaacg
caggctgaaaaacaaaacacagcaaagcaggaaaaattgaaagtgagtgaaaaaacacag
aagaaggaacttgaccaatcagaagcaaaatctaaatcgccatcccctttgaaaaataag
ctccccagtgctaaagatgctaaaacccaggaatgtgaaagcacaaaagtatctgaaatt
agtaagcgggatccaagactgaagagacaccttcaagataagtcagagggcaaagaggat
gaggtgaaagaaaagaggagaagtacagaaaaaaaagaaaaagaggaacataagacaggt
gaacatagagcagcaggcagcagaaataaagtaatcaatggtgccgttcagaaacaggac
acggctacagaggagtcagaaaaacagggtggaaaacaagggaggtcaagtagcagaaaa
cggtcacggtcacgctcccctaaggcacggtcaccatctacgcattctcccaagagacgg
gagaggagatcacccaaaagaagacttaggagtttatctcccactttatcaactcctaaa
attggaaagatacgtcagataggccctaagcagtctcatgttgaagaaggcacacaggca
gcgagagatgaaagaaactctaataagagaaatgttaaacaagaagtgcgagatccaagg
agagcgaaaaaagcccaagaagacaggccccaggaaacagcaagccagcattctacaaaa
gcttctcctgatccaaaagagaatgcagaaaactggcaaggatccaaatcaggcaagagg
tggaaatctggttgggaagaaactaaaaactcacagcagaatgaagaagcagttggtaaa
tcccctcaccaaagacaccgggaaaactggcctgctggtaaaggaattctgtcgccccga
gccccaaagcagcagcaccggttaagtgtggatgccaatttacagattcccaaagaactg
acatctgcaagcaagagagaattacttaagaaggccaatgaacggttaacatctggagaa
ataacacaagatgagttcctcatggtagctcatcagatccgacagctgttccagtatcag
gaaggaaagcacagatgtaatgtctgggatagccctacagaggaaaaatgtggtttgaaa
aagaaacctcttctatcggatgcagaactaacctattacgaacataaggctaaactaaaa
agaacacaagttcagcattcattgtccaggcttgatctgctggatcctgatgatattttg
gattatcacctacccgatgctttgctttctggaatagaatgtgagcaagcgaaagccaag
cgtggagtgccgtttgacagaaaagaaccatttgcagaaagatctaggagacactctcct
gtaagtggcactaacagaccatttgctgataacctctcaccccttgagagtcgacgaaga
ctggaggaacaaaatgccactaaaggagcaagaggttctaagaactttgatccttatgac
agctggggagaaacagatgaatttagagatgctctcagacaacaggggaaaagcacaaca
gagttccagaaaatagatggcgaggcagtctgcagatttgataatcgtgaagaaaggcag
cttctcgggcaagctggtgttcgagaggagtcaagatcaccgttcagtgagcgtttcaag
agagctagatacgaagatccagagaaagcaccatttccagaaagtccaggatcaagattt
ggaggcattgaagcaaagcagagaataagtgcactaatggaagacagacctctgtttgat
ggctctcctagacaggctgctgcaagggttggggtagatggaccaggaagtccttttgtt
gatggtcctgctgctggagcgagttcgagaattgatgggccacctggccaggctgccatg
agatttgagggccctttggtgggggcaggcgcatctcagtttgatggaccactggcagga
gcagcgggagctggagccctgagatttgatgggccaccagggcagctggcaggggccctg
aggtttgaaggacccccaggacaggttggtggaggtggtccactgaggtttgaggggcct
cttgggcagataggtgggcctttgcggtttgaggggcctgcagggcagcctgtaggtggt
cccagatttgaaggacctggagttggtctcaggtttgaaggtccccgtggtcagccttca
ggtggcctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaaccaggg
ggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaaccaggg
ggtagcctcaggtttgaggggccacatttacagccgttggggccccatggtcaacctgga
ggtggcctcagatttgaggggccacatggtcagcctatggggccacatgggccatcaggt
ggtgggctcagatttgaggggccacatggcccatcaggtggtgggctcagattggaagga
ccacatggtcagccaggcgtaggtcctaggttgatcgatggaccggtacaccagggagct
ggtggacttagatttgatggtcctctgggtcgagccggtccgagatttgatgggtgtcac
gcagccggatttgatggtcagcctggacagctatctctcttgcaaagatttgagggaatc
catggacaacccggtccgaggtttgaaagggtgcctggccaacaggcacaaccacgattt
gatacagccatacctcagagatttgatggacctcatcagccagcctccagatttgatttg
ccccttggtcttcaaggtgggcgttttgaaaatgtagctaaccatcctgcctcaagacta
gaaatgtcaccatatggacaaggtggtccatttgtcgaccatcctgggcagggcttcaac
gggccggctcatgggatgcagttccagagacctgatctgtttgatggttctcctggacca
agtttcaatgggccagctggcccaggagcacagaatttcccgttgagagcaggcggacat
tactttgaggagaaaggtcttcagggtcctcagtatggaggcttcaacagtatgcccatg
ggaggcagtcaggtttctctcatgtctgctcaaccagggccttatggccaaggtcaacag
tatttgccaaatcctggaagttttgttcagaaccctgcaggaactcttccacattcatat
cctgataaccaccttggacagcttgatgtcaatgaattgttcgctaaactgctgtcaaca
ggcatcctgaaattgtcaaaaactgattccacttcagcacaagcaaatgaaacatcagcc
cagccagctgctgaagaagaagatgatgaccagaatgaagaccagaatgttccagacctc
accaacttcgtagttgaagaacttagacagcgctttgacagcgttataaaccgactgtac
actggaattcagtgctactcatgtgggatgagattcacgacttcacagacggacgtctat
gcggatcacttagattggcattatcgccagaaccgcaccgaaaaagatgtcagccggaaa
attacacacagaagatggtattacagcttaacagactggattgaatttgaagaaatagcc
gatttagaggagcgtgcaaaaagccagttttttgaaaaagctcatgaagaggttgtgttg
aagacacaagaagctgcaaaagagaaagagtttcagagtgtccctgctggaccagctgga
gcagtcgagagctgcgaaatttgccaagagcaatttgagcaatattgggatgaggaagag
gaagagtggcacttgaagaatgctatcagagtagatgaaaagatttaccatccatcttgt
tacgaggattaccaaaagacgtcatcatttgattgcacaccgtctcccagcaagactcct
gtagagaatccactaaatatagtgttgaacattgttaaacaagaaacaccagaggcctgt
gactcgccaaaagtcaaagaagaacctgatgacacccctactgcctgtgcagaagagagc
acacctgcatctacagatattaaaacagaacctgatgagtctgttaaaatgaactga
DBGET
integrated database retrieval system
