Merops nubicus (carmine bee-eater): 103774545
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Entry
103774545 CDS
T08417
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mnb
Merops nubicus (carmine bee-eater)
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mnb03016
]
103774545 (RTCB)
Enzymes [BR:
mnb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103774545 (RTCB)
Transfer RNA biogenesis [BR:
mnb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103774545 (RTCB)
Prokaryotic type
tRNA splicing ligases
103774545 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103774545
NCBI-ProteinID:
XP_008940205
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
ASAEGQDYLKGMAAAGNYAWGNRPSPGLFSLXAFAKVFNTTPDDLDMHVIYDVSHNIAKV
EQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQG
MTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNV
TDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1346 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggatttttgcctgctatgaaacagattgggaatgtggctgcattacctggta
ttgttcatagatcaataggccttccagatgtccattctgggtatgggtttgccattggca
acatggctgcctttgatatgaatgatcctgaagcagtggtttcaccaggcggggtgggct
ttgacatcaactgcggcgtgcgcctgctgcggacaaacctggatgaaagcgacgtgcagc
ctgtgaaggagcagctcgcccaggccatgtttgatcacatccctgttggcgtcggctcca
aaggcgtcatccccatgaatgccaaggatttggaagaggcactggagatgggtgtggact
ggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgatcccaacaaggtctcctcaagagcaaagaagaggggcttgcctc
agctggggaccttgggagcaggaaatcactacgctgagatccaggttgtggacgagattt
acaacgagtacgccgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatga
tccacagtggcagcagaggcctgggccaccaggttgccacagatgcattggtggctatgg
aaaaagccatgaaacgggacaaaatcatagtgaatgatcggcagctggcgtgtgccagga
ttgcctctgcagagggacaggattacctgaaggggatggcagctgctggaaactatgcgt
ggggcaaccgcccaagtcctggtttgttttctctgtaggcctttgccaaagtcttcaaca
caacgccagatgaccttgatatgcatgtcatctatgatgtgtctcacaacattgccaaag
tggagcaacatgtagtggatggaaaggagagaactctgttggtgcacagaaagggatcaa
ccagggccttccctccccaccatcctcttattgcagtcgattatcaactgactggacagc
ctgttttgatcggcgggactatgggcacctgtagctatgttcttactggcacggagcaag
gcatgactgagaccttcggaactacctgccatggagctggacgtgcactgtctcgagcca
aatctcgacgtaacttggacttccaggatgtattggacaagctggctgacatgggcattg
ccatccgtgttgcttctccgaaactggtcatggaagaagcaccagagtcttacaagaatg
tgacagatgtggttaacacttgtcacgcagctggcatcagcaagaaagccattaaactga
gacctattgctgttataaaaggctag
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