Merops nubicus (carmine bee-eater): 103777108
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Entry
103777108 CDS
T08417
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnb
Merops nubicus (carmine bee-eater)
Pathway
mnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103777108 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnb03019
]
103777108 (PARN)
Enzymes [BR:
mnb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103777108 (PARN)
Messenger RNA biogenesis [BR:
mnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103777108 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
103777108
NCBI-ProteinID:
XP_008942896
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKHSQANGAGSLSYISPNATKCPVTIPDDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTAAEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLKT
QSTPYVSQSRYYCVNSFTGTSTEGTRIMSPIQEETGSDDIEEGEGQNPECGQTDSCEESL
PDGKRRAKKFKKIKTEQAPVGSLTTNSTGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaagaa
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaagacaa
ctaagggaacagtatgatgaaaagcattctcaggccaatggtgcaggatctctgtcatac
atttctcccaatgccacaaagtgtcctgtgacaattcctgatgatcagaaaaaattcatt
gaaaaagtagtggaacagatagaagatttattaaagaatgaagaaaatgaaagtttggaa
ctggaaccatgtacaggatttcagaggaaattaatttatcagactttgagctggaagtat
ccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatacattgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagagcagcagaaacaagcaaaagaacag
gaagaattgaatgatgcagtaggattttccagagttgttcatgccattgctaactctggc
aagcttgttatcgggcacaacatgctactggatgttatgcataccatacaccagttctat
tgtcccttacctgatgacctaagtgaattcaaggaagtaacatcatgtgtctttccccgg
ctattggatactaaactgatggcaagtacacaaccttttaaggacatcattaataataca
tcccttgcagaactggagaagcgtttaaaagaggttccattcagccctcctaaagttgaa
agtgcagaggggtttccaagttacgatacagctgctgaacagctccacgaagcaggatat
gatgcttatattactggactgtgcttcatctccatggctaatttcctaggttcattcctc
agtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaacaag
ctgtttctcatgagagtaatggacataccatatctcaatttggaaggaccagacttgcag
ccaaaacgagatcatgtacttcatgttacttttcccaaagagtggaagactagtgacctt
taccagcttttcagtgcctttggtaacattcagatttcgtggattgatgatacatcagca
tttgtatcactgagccagccagaacaagtacaaatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacgtacgcagaatatgttgagaaaaaacatgaagaaaaacag
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaaact
cagagcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggtacc
agtacagagggaacgagaatcatgagtcctattcaggaagagactggttctgatgatata
gaagagggagaaggccaaaatccagaatgtggtcagactgactcctgtgaggagtccctt
ccagatggtaagaggagagccaaaaagttcaaaaagatcaagacagaacaagctccagta
ggaagcctcacaactaattccactggaatttttgaagttcctgaaacatggtag
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