Merops nubicus (carmine bee-eater): 103780030
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Entry
103780030 CDS
T08417
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mnb
Merops nubicus (carmine bee-eater)
Pathway
mnb03013
Nucleocytoplasmic transport
mnb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103780030 (UPF1)
03015 mRNA surveillance pathway
103780030 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnb03019
]
103780030 (UPF1)
Enzymes [BR:
mnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103780030 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103780030 (UPF1)
Messenger RNA biogenesis [BR:
mnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103780030 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103780030 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103780030
NCBI-ProteinID:
XP_008945926
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALITFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQQGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatggccctgatggcatcctgcagaatggagctgtggatgataatgtggctaaaacc
agccagcttctggcagagctgaactttgaagaggatgaagaagatacctattacacaaag
gatctccctgtgcatgcttgcagctactgtggtatccatgaccctgcctgtgtggtttac
tgcaacaccagcaagaagtggttctgtaacgggcgtgggaacacgtctggcagccacatt
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccacaaggatggacctcta
ggagagactgtcttggagtgctataactgtggatgtcgtaatgtgtttctccttggcttt
atcccagctaaggcagactccgtggttgttttgctgtgcaggcagccatgtgccagccag
agcagtttaaaggatattaattgggacagttcacagtggcagcctctcatccaggatcgc
tgcttcctttcgtggctggtgaagatcccatctgaacaggagcagctgagagcccgtcag
attacagctcaacagatcaacaaactggaagaactgtggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagactat
gacaagaaactgaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttacttcactttgccaaagactgattcggatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagctgagg
agcagcgttggagcacctgtggaggtcactcataacttccaagtggattttgtatggaag
tctacttcatttgacagaatgcagagtgctttaataacatttgctgtggatgagacttca
gtgtctgggtacatctatcacaaactcttaggtcacgaggtagaagatgtcattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtcctcctggcact
gggaagacagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcct
gtgttagtctgtgctccaagcaatatagctgtagatcagctgactgagaagatccatcaa
actggactgaaggtggttcgcctgtgtgctaaaagtcgtgaggccattgactctcctgta
tccttcttggcattgcataaccagatcagaaacatggacagcatgccagagctgcagaaa
ctgcagcagcttaaagatgagactggagaactgtcatctgctgatgagaagcgttaccgt
gcgctgaagcggacggcagagcgtgaactactgatgaacgcggatgtgatctgctgcact
tgtgtgggagctggggatccaagacttgccaagatgcagttccgctccattctgatcgat
gagagcacccaggccacggagcccgagtgcatggtgccagtcgtcctgggggcaaagcag
cttatccttgtgggtgaccactgccagcttggccccgttgtgatgtgtaagaaggctgcc
aaggccgggctgtcgcagtcgctcttcgagaggctggtggtgctggggatccgccccatc
cgcctgcaggtgcagtaccgcatgcaccccgccctcagtgctttcccctccaacatcttc
tacgagggctccctccagaatggtgtcactgcagctgaccgtgtgaaaaaagggtttgat
ttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaagaagaa
atcgccagctcgggcacctcctacttaaacaggacggaagctgccaatgtggagaagata
acaacaaagctattgaaggctggtgccaaaccagatcagattggcatcattactccttac
gaaggtcagagatcctacctggtgcagtacatgcagttcagtggttccctgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccagggcagagagaaggacttc
attatcctttcttgtgtgagggccaacgaacaccaagggataggatttctgaatgacccc
aggcgtcttaacgtcgctctcacaagagcaagatacggagtaattattgttgggaaccca
aaagctctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaag
gttctggtggagggaccactgaataacctccgggagagcctcatgcagttcagcaagccc
cggaagctggtcaataccatcaacccaggtgcccgtttcatgacaactgccatgtatgat
gcacgtgaggccattattccaggatctgtctatgaccggagcagccaaggccgcccatcc
aacatgtacttccagacccacgaccagatcgggatgatcagtgccggccccagccacgtc
actgccatgaacattcccatccctttcaacctggtgatgccacccatgccaccaccaggg
tactttggccaggcaaacggaccagctgcaggacgtggggcaccgaaagggaagactggt
cgtggcgggcgccagaaaaatcggtttgggattcctggaactagtcagtcaaaccttcca
aatagtcaagcgagccaagacgtggtgtcccagcctttctcccagggtccactgactcag
gggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaa
ttatcccaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacaaggtggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
