Merops nubicus (carmine bee-eater): 103780997
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Entry
103780997 CDS
T08417
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnb
Merops nubicus (carmine bee-eater)
Pathway
mnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103780997 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnb03019
]
103780997 (PNLDC1)
Enzymes [BR:
mnb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103780997 (PNLDC1)
Messenger RNA biogenesis [BR:
mnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103780997 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF6078
Motif
Other DBs
NCBI-GeneID:
103780997
NCBI-ProteinID:
XP_008946949
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MEFTGLHSTSPQNNEPSLFGSPGEWYLKARGSVQRFTVTQLGLAIFSKENSNKYVVHSYN
FFLFPSTWGVADVEFALSASSIQFLSHFGFDYNKFLKDGIPYMNEVQEKILSQHLLAGSW
KFSSALDRDVLKKAINEVTCWIAAAEEEETMILQDLSNYQLFEVQLVLRQALQNVWTQPL
GDKKVMVKKVSPQHRQLLENSRYDFCRKELILLSARGFTNLFHTLVKAKKPLVGHNMLMD
LMHLHDKFYKPLPESYQEFKRNIHNLFPVVIDTKTVTRSIWKKCQFPRVSNLLETYVVLC
SSNLNPKDSAWPVIDLASDCSRYAEKQCPHEAAYDAFLCGSVLLKSAHLLLCRSTDDAVQ
ADPSFSQYLTVLAEDLNKVNLIRGGVASINFSGEDVPLQRPPLLVVHVRGWPGLNERQIY
QEFKALCRFDVRRLSKNQFILLSNKFNHVRLVLRDYQHHPHLRISIYRHWRHSPRVNCLL
QVSGIVALWSLLAFVLGGAPCSSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggcttacattcaacctccccacaaaataatgagcccagcctgtttggc
tcccctggggagtggtacctgaaggccagggggagtgtccagcgcttcactgttacccag
ctcgggctggcaatattctcaaaagaaaattcaaacaagtatgtggtgcattcatacaac
ttttttctcttcccatcaacatggggagttgcagatgtcgaattcgccctttcagcatct
agcattcagttcctgtctcattttggctttgattataataagttcctcaaggatggaatc
ccatacatgaatgaggtacaggagaagatccttagccagcatctcttagcaggtagctgg
aaattcagcagtgccttggacagggatgtgctgaagaaggctattaatgaagtgacctgt
tggatagctgcagcagaggaagaggagactatgattctgcaagatctgagtaactatcag
ctgtttgaagttcagctggttctgagacaagctcttcaaaatgtttggacacagcctctg
ggagacaagaaggtaatggtgaaaaaagtgagtccacagcatcgtcagcttttggagaac
tctcgttacgatttctgccggaaggagctcatcctcctgtctgcccggggcttcaccaac
ctcttccacacacttgttaaagccaagaagcccctggtgggacacaacatgcttatggac
cttatgcatcttcatgacaagttctacaagccccttccagaaagctaccaggaattcaaa
aggaacattcataacctgtttcctgttgtcatagacaccaagactgtaacaagatccatc
tggaagaaatgtcaatttcctcgagtatctaatcttttggagacatatgtggttttgtgc
agtagcaacctgaatcccaaagattcagcgtggccagtgatagatcttgcaagcgactgc
tcaagatacgctgagaagcagtgtcctcacgaggcagcctatgatgcgtttctctgtggt
tcagttcttctgaagtcagctcatttgctactgtgcagatccacagatgatgcagtgcag
gctgatccttctttctcccagtatctcaccgtgctagctgaggatctgaacaaagtgaat
ctcatccgaggtggtgttgcaagcattaatttttctggggaagatgttcccctccagcgt
ccccctctcttggttgtccatgtccgaggctggccagggctgaacgaaaggcagatttac
caagagtttaaagctctttgtcgctttgatgtcagacggctttcaaagaaccagttcatt
ctgctctccaataaatttaatcatgtcaggcttgttctgcgggattaccagcatcaccct
cacctgcggatttccatctatcgccactggagacactctccgcgagtgaactgcctgctg
caagtctctggcatagtggcactgtggtctctcctggcctttgttcttggaggagctcct
tgctcttcactttga
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