Moraxella nasicaprae: LU297_06340
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Entry
LU297_06340 CDS
T09131
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mnc
Moraxella nasicaprae
Pathway
mnc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mnc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU297_06340 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnc03021
]
LU297_06340 (rpoC)
03400 DNA repair and recombination proteins [BR:
mnc03400
]
LU297_06340 (rpoC)
Enzymes [BR:
mnc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU297_06340 (rpoC)
Transcription machinery [BR:
mnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU297_06340 (rpoC)
DNA repair and recombination proteins [BR:
mnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU297_06340 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UXZ04228
LinkDB
All DBs
Position
1349690..1353919
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLDIMKGPADSGTREFDSIQISLASPEAIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGIICEKCGVEVTAAKVRRDRMGHIELASPVAHIWFLK
SLPSRIGLLLDITLRDIERVLYFESYIVTDPGMTSLEKYQLLDDEEYFTALEQYGDEFVA
KMGAEAVQDLLRDIDVDGEIDELRLSIPQTSSETKLKKMSKRLQLLESFRDSGNKPEWMV
MTVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRM
LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYAKLLQNNIASTIKAAKKMVEREEPAVWDMLASVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQL
EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRSHINAKGEGMVFSTVNEALRAIG
SDDLSVNAKIKVRVTETILDEKTGEKVTKTEIKDTVAGRLLIWNIMPEGMAFSECNTEMT
KKNISKLLNSCYRKLGVKESVLFADHLMYLGFAQATLSGISIGMEDMVIPPTKKEIVDAA
DAEVRDIEKQFESGYVTAGERYNKVVDIWSRTSDKIANAMMENLSTDEVMNADGELESQK
SFNSIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQDLVITQDDCGTEAGQLMTPVIDGGEIVERLGD
RVLGRVAAKDVVNQAGEVIVAAGTLIDERLVEKLDANAIDEVFVRSVITCESTQGVCAKC
YGRDLARGHLVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASATSVDNSVSVGNAGSV
RFHNMKTVEHADGHLVIVSRSAEIGVADGQGRERERYKVPYGSSILVRDGDSVEAGQVIA
KWDPHTHPIITEFAGTARFSDITDGMTATVKVDEMTGVSSFEILASKDRPSIAKDLRPAI
ILDTDAGKEVVYFLPSDTVIRVSEGEYVTAGSVLGRVPQATSGTKDITGGLPRVADLFEA
RRPKDHAIMAEMSGVVSFGKETKGKNRFIITNEDGDVHEELIPKWRQINVFEGETVERGE
VISDGPQNPHDILRLKGETALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVEITD
GGDSSYFKGDQAEYSKIRLLNEELVKNNKFPVQFERQLLGITKASLATESFISAASFQET
TRVLTAAAVMGKVDELSGLKENVVVGRLIPAGTGLAYHQSRQRKAEKAAAQESAAVQDLL
ATESVLSDGMPSVEENFAKAFADELGNQE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttattagatatcatgaaaggtcctgcggacagtggtactcgtgagtttgac
agcattcaaatctcattggcatcaccagaagcgattaaatcttggtcgcatggcgaagtt
aaaaagcctgaaaccattaactaccgtacctttaaacctgagcgtgatggtctgttttgt
gccaaaatctttggacctgttaaggattttgaatgtctatgtggcaaatacaaacgccgt
aagtttcaaggcatcatctgtgagaagtgtggtgtagaggttactgctgccaaagttcgt
cgtgaccgcatgggtcatattgagcttgcatcgcctgtggctcatatttggtttttaaaa
tctttgccaagccgtatcggtttattgcttgacatcactttgcgtgacattgagcgagtg
ctttattttgaaagctacatcgtgaccgaccctggcatgaccagccttgaaaaatatcag
ctgcttgatgatgaagaatatttcaccgcattagagcagtatggcgatgagtttgttgcc
aagatgggtgcagaagcggttcaagacttgcttagagacatcgatgttgatggtgagatt
gatgaacttcgtttgtcaattccacaaaccagctcagaaaccaagcttaaaaagatgtca
aaacgcttgcagctactagaatctttccgtgattctggcaacaagcctgaatggatggtg
atgacagtattgcctgtattgccacctgatttgcgtccgctggtgccactggaaggtggt
cgttttgcgacatcggatttgaacgacttgtaccgccgtgtcatcaaccgtaataaccgt
ttgaagcgtcttttggagctaaacgcccctgacatcatcgtgcgtaacgaaaagcgtatg
ttgcaagaagcggttgatgccctgcttgacaatggtcgtcgtggtcgtgccatcacaggc
tccaataagcgtccattaaaatctttggcggacatgattaaaggtaaacaaggtcgtttc
cgtcaaaacctattgggtaagcgtgtggactactctggtcgttcggtcatcgtggtgggt
ccaacattgcgtcttcatcaatgtggtttgccaaagaaaatggcgttggagctatttaag
ccattcacttatgctaaattgctacaaaacaacatcgctagcaccatcaaggctgctaaa
aagatggttgagcgagaagagcctgccgtttgggacatgctcgccagcgtgattcgtgaa
catccagtgctactaaaccgtgctccaacactgcaccgtttgggcttgcaagcatttgag
cctgtattgattgaaggtaaagccattcagttacacccacttgtctgtgcggcatttaac
gccgactttgacggtgaccaaatggcggtgcatgtgcctttgaccctagaagcacagcta
gaagctcgtgccttgatgatgtccaccaacaacattctatctcctgctaatggtgagcca
atcatcgtaccatctcaggacgtcgtgcttggtttgtactatatcagccgtagccatatc
aatgccaaaggcgagggcatggtatttagtaccgtcaatgaagcacttcgtgccatcggt
tctgatgacttgtcagtcaatgccaaaatcaaagtgcgtgttactgagaccattttggac
gaaaaaactggcgaaaaagtcaccaaaaccgaaatcaaagacacggttgcaggtcgtctg
ctgatttggaacatcatgccagaaggcatggcgtttagcgagtgtaatactgagatgacc
aagaaaaacatctcaaaactattaaactcatgctatcgtaaacttggtgttaaagaatcg
gtattatttgccgaccatctgatgtacttaggttttgcccaagcgactttgtcaggcatt
tctattggtatggaagacatggtcattccaccaaccaaaaaagaaatcgtagatgctgcc
gatgccgaagtgcgtgatatcgaaaaacaattcgaatctggctatgtgaccgctggcgaa
cgctacaacaaagtggttgatatctggtctcgtacctctgacaaaatcgccaatgcgatg
atggaaaacctatctaccgatgaagtgatgaatgctgatggcgaacttgaaagccaaaaa
tcattcaactccatctatatgatggcggattctggtgctcgtggtagtgctacacagatt
cgtcagcttgctggtatgcgtggcttgatggcaaaaccagacggttcgattattgaaaca
ccgattaaagcaaacttccgtgaaggtttgacggtacttcaatacttcatctcaacgcac
ggtgctcgtaaaggtcttgccgataccgccctaaaaaccgcaaactctggttatctaact
cgtcgtttggttgatgtggcacaagatttggtcatcactcaagatgactgtggcacagaa
gcaggtcagttgatgacccctgtgattgatggtggcgaaatcgtggaacgcttgggcgac
cgagtgcttggtcgtgtggctgccaaagatgtcgttaatcaagctggcgaagtgattgtc
gctgctggcactttgattgatgagcgtttggttgagaagctagatgctaatgccatcgat
gaggtctttgttcgttcggtcatcacttgtgaatcaacacaaggggtatgtgctaagtgc
tacggtcgtgacttggctcgtggtcacttggtgaatattggcgaatcagtgggtgtcatg
gcagcacaatctattggtgagccaggtactcagctgacgatgcgtactttccacgtgggt
ggtgcagcatcggcgacttctgtggacaacagcgtttctgtgggcaatgctggttcggtg
cgtttccacaacatgaaaaccgtagaacatgctgatggtcatttggtcatcgtttctcgt
tctgctgagattggtgtggcagatggtcaaggtcgtgagcgtgaacgctataaagtgcct
tatggttctagtatattggtgcgtgatggcgacagcgttgaagcaggtcaagtgattgcc
aagtgggatccgcatacccacccaatcatcaccgaatttgctggtacggctcgttttagc
gacatcacagatggcatgacagcaaccgtcaaggtcgatgagatgactggtgttagctca
tttgaaatcttggcaagtaaagaccgtccaagcattgccaaagatttgcgtccagcgatt
atcttggatacagatgcaggcaaagaagtggtgtatttcttgccaagcgacaccgtcatt
cgtgtcagcgagggcgagtatgttaccgcaggttcggtcttgggtcgtgtgcctcaggct
acttctggtaccaaagatattaccggtggtctgccacgagttgctgacttgttcgaagct
cgtcgtccaaaagaccacgccatcatggcagagatgagcggtgtggtgtcatttggtaaa
gaaaccaaaggcaagaaccgtttcatcatcactaatgaagatggcgatgttcatgaggag
ttgattccaaaatggcgtcaaatcaacgtgtttgaaggcgaaaccgttgagcgtggcgag
gttatttctgacggcccacaaaacccgcatgacatcttgcgtcttaaaggcgaaacagca
ttggcaaattatatcgtcaatgaagtgcaagaagtttatcgcttacaaggcgtaaaaatt
aacgataagcacatcgaagttattgttcgtcagatgcttcgcaaagttgaaatcactgac
ggtggcgattctagctactttaaaggcgaccaagctgagtactcgaagattcgtctattg
aatgaagagcttgtcaaaaataataagttcccagttcaattcgaacgccagctacttggt
attaccaaagcatcgcttgccaccgaaagcttcatctcggcagcgtcattccaagagacc
actcgtgtcttgacagcggcagccgtgatgggtaaagtcgatgagctaagcggtctaaaa
gagaatgtcgtggtaggtcgcctaatcccagcaggtactggtttggcttatcatcaatct
cgccaacgcaaagcagaaaaagccgctgcccaagaatcggcagcagtacaggacttattg
gcaactgagtctgtactgtctgatggcatgccaagcgttgaagaaaactttgccaaagcc
tttgctgatgaattgggtaaccaagaataa
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integrated database retrieval system
