Microbacterium neungamense: JSY13_03720
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Entry
JSY13_03720 CDS
T09212
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03420
Nucleotide excision repair
mnf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JSY13_03720
03430 Mismatch repair
JSY13_03720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnf03400
]
JSY13_03720
Enzymes [BR:
mnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JSY13_03720
DNA repair and recombination proteins [BR:
mnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JSY13_03720
MMR (mismatch excision repair)
Other MMR factors
JSY13_03720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UWF78150
LinkDB
All DBs
Position
783251..786976
Genome browser
AA seq
1241 aa
AA seq
DB search
MTAPTGAAMTETEATRTEEEAATADTAEARAAGAATLSATDIAAALGQPPPTPAQQRVIE
APPGPALVVAGAGSGKTETMSGRVVWLVANGHVRRDEILGLTFTRKAAGELAERIAARLA
VIDEFRRRGLLPHLPALVASGALERIDVAAPGRQREIVRAQVLDALADRYGTGWDPAAPR
AAEELMIRPRVSTYNAFADGIVREHAARIGRDPDVAMLSQAASWMLAREVVMRSDLPELE
QIDYALGTVIDAVQRLAGDALDHRADLALAERIAREQAAAFDPYRGNPDVDKAVTNLLSV
PTLTRLVREYIAEKQRRGVLDFADQVAGAYDIVESAPDVRDELRQQHRVVLLDEYQDTSV
IQTRFLAALFRDAAVMAVGDPHQSIYGWRGASADNLYAFAGAFSGDGTAQTYSLMTSWRN
DRRILDVANRVLEPLQRPGLDVPPLDPRPGAGDGTVQVRFPLTVDDEAAEVADWFAERRA
EHDRSGAARPHTGAILFRSKKHMQTFAEALAARGIPHRILGLGGLLSTPEVVDVVSTLRV
VHDPTAGSALIRLLTGPRFGVGVADMAALYDLGRTIAERDSALMPLPEEIRMRLRSSRGA
DEAVSIVDAVDVVRAVRDDYRLLERISPEGRARIRAAGEMLERLRRAASQPIPELIRMIE
GELRLDVELAANETRGTARVAATQLRAFADEVKAFLAADERGTIGSLLAWLDKAESTDEL
VPRPEPPEPGVVQLLTIHGSKGLEWDAVAVVRLVVDELPTRVSDTSGWFGFGVLPFALRG
DRDALPRFEWDPESAMEGETDPVKRHKLAQASLSGGATKANPHGGALKRFKDAYRAYQQQ
EERRLAYVAVTRARTDLLLSGSHWAGQKSPRQPSPYLVEALDVLGLDAIAPVDAEENPYD
GPGHTLTWPMDPLGARRAAVERAAAEVRAAMASPQPPAPSPELERLLAERAARRRGTDAA
PPTRVPASRFKDYVTDFQGTLSSIVRPMPERPYRQTRLGTLFHAWVERRSELVGVGTRPD
EALWELDEETDAGAAADTADLARLQEIFERSEWGPLRPIAVELEIDFALDAPRSSSDPAA
PPAGGGSWSLSEGAGGVRDETPAGGGSWSLSEGAGGVRDETPAGGGSWSLSEGAGGVRDE
TPAGHIIICKLDAVYRREDRGGRIEIVDWKTGKAPRTAAEREERMLQLALYRLAYHRRFG
VPLEDIDVALFYVSDDLVIRDDRVWSEAELVQRWRAARAAR
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccccaccggcgccgcgatgacggagacggaggcgacgaggaccgaggaggag
gccgcgacggccgacacggcggaggcacgggcggccggggccgcaactctgtccgccacc
gacatcgccgccgccctcggtcagccgccgcccacaccggcgcagcagcgcgtgatcgaa
gccccgccggggccggcgctcgtcgtcgcgggcgccggcagcggcaagaccgagaccatg
tccggccgggtggtgtggctcgtcgccaacgggcacgtgcgccgcgacgagatcctcggg
ctcacgttcacccggaaggcggccggtgagctcgccgagcgcatcgcggcccggctggcc
gtgatcgacgagttccgccgccgcggcctgctgccgcacctgccggcgctcgtcgcctcc
ggggcgctggagcggatcgacgtcgccgcgcccggtcggcagcgcgagatcgtccgcgcc
caggtgctcgacgccctcgccgaccggtacggcaccggctgggacccggcggcaccgcgc
gccgccgaggagctgatgatccggccccgcgtgtcgacgtacaacgccttcgccgacggc
atcgtgcgggagcacgccgcgcgcatcggccgcgacccggacgtcgccatgctcagtcag
gccgcctcctggatgctggcgcgcgaagtcgtgatgcgctccgacctgcccgagctggag
cagatcgactacgcgctgggcaccgtcatcgacgccgtgcagcggctggccggtgatgcg
ctggaccaccgcgccgacctcgcgctcgccgagcggatcgcccgcgagcaggcggcggcg
ttcgatccgtaccgcggcaaccccgatgtggacaaggcggtcacgaacctgctcagcgtg
ccgacgctgacccggctggtgcgtgagtacatcgccgagaagcagcgccgcggcgtgctc
gacttcgccgaccaggtcgccggcgcctacgacatcgtggagtccgcgcccgatgtgcgc
gacgagctgcgccagcagcatcgcgtggtgttgctggacgagtaccaggacacgtccgtg
atccagacccggttcctcgccgccctgttccgcgacgccgcggtgatggcggtcggagac
ccgcatcagtcgatctacggctggcggggagccagcgccgacaacctgtacgcgttcgcc
ggcgcgttctccggcgacgggaccgcgcagacgtacagcctgatgacgagctggcgcaac
gaccgccgcatcctcgacgtcgccaaccgcgtgctcgaaccgctgcagcgaccgggactg
gacgtgccgccgctggatccgcgtccgggggccggcgacgggacggtgcaggtgcggttc
ccgctcaccgtcgacgacgaggccgccgaggtcgcggactggttcgccgagcgccgtgcc
gagcatgaccgctccggcgccgcacgtccgcacaccggcgcgatcctgttccgctccaag
aagcacatgcagaccttcgcggaggcgctcgccgcccgcggcatcccgcaccgcatcctc
ggcctcggcggcctgctctccactcccgaggtcgtcgacgtcgtctccacgctccgggtc
gtgcacgatccgaccgccgggtccgcgctgatccggctgctcaccggtccgcggttcggg
gtgggcgtcgccgacatggcggccctgtacgacctcgggcgcaccatcgccgagcgcgac
agcgcgctgatgcccctgccggaggagatccggatgcggctgcgctcctcccgcggggcc
gacgaggcggtgtcgatcgtggacgccgtggacgtggtccgcgcggtccgcgacgactac
cggctgctggagcggatcagccctgagggcagggcgcggatccgggccgcaggcgagatg
ctggaacgcctgcggcgtgccgcgtcgcagccgatccccgagctgatccggatgatcgaa
ggggaactgcggctggacgtcgagctcgccgccaacgagacccggggcaccgcccgggtc
gcggcgacccagctgcgcgcgttcgccgacgaggtgaaggccttcctcgccgccgacgag
cgcggcacgatcggcagcctcctcgcctggctggacaaggcggagagcacggacgaactc
gtgccgcggccggagccgcccgagcccggggtggtgcagctgctcaccatccacggatcc
aagggcctcgagtgggatgccgtcgcggtcgtgcggctggttgtcgatgagctccccact
cgcgtgtccgacacctcggggtggttcggtttcggcgtgctgccgttcgcgctccgtggc
gaccgcgacgcgctgccccgattcgaatgggaccccgaatcggcgatggagggcgagacc
gacccggtgaagcggcacaagctggcgcaggcgtcgctctccggcggcgcgacgaaggcg
aacccgcacggcggtgcgctcaagcggttcaaggacgcctaccgcgcctatcagcagcag
gaggagcggcggctcgcgtacgtcgccgtcacccgcgcccgcaccgacctgctgctgagc
ggctcgcactgggcggggcagaagagcccgcgtcagccgagcccgtacctcgtcgaggcg
ctcgatgtgctcgggctcgacgcgatcgcgccggtggacgccgaagagaacccgtacgac
ggtccggggcacaccctcacctggccgatggacccgctcggcgcacgccgcgccgccgtg
gaacgcgccgcggccgaggtgcgcgccgccatggcgtcaccgcagccgccggccccgagc
cccgagctcgagcggctcctcgccgagcgcgcggcacgccggcgcggcacggatgccgcg
ccgccgacgcgcgtgccggcatcgcggttcaaggactacgtcaccgatttccagggcacc
ctgtcgtccatcgtccgcccgatgccggagcgtccgtaccggcagacgcgcctgggcacg
ctgttccacgcctgggtggagcggcgttccgagctcgtcggcgtcggcacgcgccccgac
gaggcgctgtgggagctggacgaggagacggatgccggcgccgcggcggacaccgccgac
ctcgcccggctgcaggagatcttcgagcgcagcgaatggggcccgctccgtccgatcgcc
gtcgagctcgagatcgacttcgccctcgacgccccccgctcatcgagcgaccccgccgca
ccgcccgccggcggcggttcctggtcgttgagcgagggcgccggaggcgtgcgagacgaa
acgcctgccggcggcggttcctggtcgttgagcgagggcgccggaggcgtgcgagacgaa
acgcctgccggcggcggttcctggtcgttgagcgagggcgccggaggcgtgcgagacgaa
acgcctgccggccacatcatcatctgcaagctcgacgccgtctaccgccgcgaggaccgt
ggcggacggatcgagatcgtcgactggaagaccgggaaggcgccgcgcaccgcggccgag
cgggaggagcggatgctgcagctcgcgctctaccggctggcgtaccaccgtcgcttcggc
gtcccgctcgaggacatcgacgtggcgctgttctacgtgtccgacgacctcgtcatccgc
gacgaccgggtctggtcggaggcggagctggtccagcgctggagggcggcgcgcgcggcc
cgctga
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