Microbacterium neungamense: JSY13_05760
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Entry
JSY13_05760 CDS
T09212
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSY13_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnf03019
]
JSY13_05760
03009 Ribosome biogenesis [BR:
mnf03009
]
JSY13_05760
Enzymes [BR:
mnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JSY13_05760
Messenger RNA biogenesis [BR:
mnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JSY13_05760
Ribosome biogenesis [BR:
mnf03009
]
Prokaryotic type
rRNA helicases
JSY13_05760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UWF78646
LinkDB
All DBs
Position
complement(1204234..1205994)
Genome browser
AA seq
586 aa
AA seq
DB search
MDPTDAPPASPGFEELGITGPVLKAVRDLGYETPSPIQAATIPTLLAGRDVVGMAQTGTG
KTAAFALPVLERLDVSQKTPQALVLAPTRELALQVCEAFESYASRMRGVHVLPVYGGQGY
GVQLSALRRGVHIVVGTPGRIMDHLAKGTLDLSALTYLVLDEADEMLKMGFAEDVEQILA
QTPVEKQVALFSATMPAQIRRLAQKYLRDPEEITVKSKTATSTNITQRYLVVSYAQKVDA
LTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQLKDGK
LDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRTGDAISFITPRERY
LLKHIEKATRQQPTQMQLPTTEDVNTTRLARFDDAITAALQETDRIEGFRDIIAHYVRHH
DVPEADVAAALAVVAQGETPLLLDPATDELSRAVERDNRPPRERTDRADRPDREARGPRR
GRGDYAPYRIEVGRRHRVEPRQIVGALANEDGLGRDDFGAIDIRPDFSIVELPANLDRSV
LDRLRDTRISGRPIEIKPDRGTGGRGGGRRDARREDRPSRKPRHRA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atcgacccgaccgacgcaccgcccgcgagccccggattcgaggagctcggcatcacgggg
cccgtgctgaaagcggtccgcgatctcggctacgagacgccctcgccgatccaggccgcg
accatccccaccctgctcgccggacgcgacgtcgtcggcatggcgcagaccggcaccggc
aagaccgccgccttcgcgctgcccgtcctggagcggctggacgtgtcgcagaagacgccg
caggccctggtgctcgctcccacccgcgaactggcgctgcaggtctgcgaggcgttcgag
tcctacgcctcgcggatgcggggcgtgcacgtgctgccggtgtacggcggccaggggtac
ggcgtgcagctgtccgcgctccgccgcggcgtgcacatcgtcgtcggcacccccgggcgc
atcatggaccacctggccaagggcaccctcgatctgtccgcactgacctatctcgtactg
gacgaggccgacgagatgctgaagatgggcttcgcggaggacgtggagcagatcctcgcc
cagacgccggtcgagaagcaggtcgccctgttctcggcgaccatgccggcacagatccgc
cgcctcgcgcagaagtacctgcgcgacccggaggagatcacggtcaagtcgaagaccgcg
actagcacgaacatcacccagcgctacctcgtcgtctcctacgcgcagaaggtggatgcc
ctcacccgcatcctcgaggtggagaacttcgacgggatgatcgtgttcgtccgcaccaag
aacgagaccgagaccctcgccgagaagctccgcgcccgcggctattccgccgcggcgatc
aacggcgacgtgccgcaggtgcagcgcgagcggtcggtgaaccagctcaaggacggcaag
ctcgacatcctcgtggccacggatgtcgccgcccgcggtctggacgtggagcggatcagc
cacgtggtgaacttcgacatcccgacggacaccgagtcgtacgtgcaccgcatcggccgc
accgggcgcgccggccgcaccggcgacgcgatcagcttcatcaccccgcgcgagcggtac
ctcctgaagcacatcgagaaggccacccgccagcagccgacgcagatgcagctgccgacc
acggaggacgtgaacaccacgcgtctggcgcgcttcgacgacgcgatcacggccgccctg
caggagaccgaccggatcgagggcttccgcgacatcatcgcccactacgtccgccaccac
gatgtgccggaggcggacgtcgcggccgcgctcgccgtcgtcgcgcagggcgagacgccg
ctgctgctggatcccgccaccgacgagctgtcccgagccgtggagcgggacaaccgcccg
ccccgtgagcgcaccgaccgcgcggaccgcccggaccgcgaggcgcgcgggccccgccgc
ggccgtggcgactacgccccgtaccggatcgaggtggggcgtcgccatcgggtcgagccg
cggcagatcgtcggtgctctcgccaacgaggacggcctgggtcgcgacgacttcggcgcg
atcgacatccgccccgacttctccatcgtcgagctgccggcgaacctggaccgctcggtg
ctcgaccggctgcgggacacccgcatctcgggccggccgatcgagatcaagccggatcgc
gggaccggcggacgcggtggcgggcgccgagacgcccggcgcgaggaccggccctcccgc
aagccccgccaccgggcctga
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