Microbacterium neungamense: JSY13_07800
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Entry
JSY13_07800 CDS
T09212
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03030
DNA replication
mnf03430
Mismatch repair
mnf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JSY13_07800 (dnaE)
03430 Mismatch repair
JSY13_07800 (dnaE)
03440 Homologous recombination
JSY13_07800 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnf03032
]
JSY13_07800 (dnaE)
03400 DNA repair and recombination proteins [BR:
mnf03400
]
JSY13_07800 (dnaE)
Enzymes [BR:
mnf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JSY13_07800 (dnaE)
DNA replication proteins [BR:
mnf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JSY13_07800 (dnaE)
DNA repair and recombination proteins [BR:
mnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JSY13_07800 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
UWF76763
LinkDB
All DBs
Position
complement(1623723..1627238)
Genome browser
AA seq
1171 aa
AA seq
DB search
MASDSFVHLHVHSEYSMLDGAAKINAMTQTAADYGMPAIAVTDHGNTFAAFEFYNAARAS
GVKPIIGLEAYVTPGTHRSDKSRVSWGSPDQKNDDVSGGGAYTHMTLWSESTEGMHNLFR
LSSLSSIEGYYFKPRMDRELLQTYGKGLIATTGCPSGEVQTRLRLGQYDAARAAAAEFQD
IFGKDNYFAEIMDHGLSIERRVMTDLLRLAKDLGIPLVATNDSHYTHQHEADAHAALLCV
QSGSTLDDPNRFKFDGDGYYIKTAQEMRQLFRDHPEACDNTLLIAERCQVEFNTSANYMP
RFPVPEGETEDSWLIKEVEKGLHYRYPNGIPDKVRKQAEYETGIILQMGFPGYFLVVADF
INWAKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLIFERFLNPDRVSMPDFDVDFD
DRRRGEVIEYVTEKYGSERVAQIVTYGTIKSKQALKDAGRVLGFPFSMGERLTKAMPPPV
MGKDMPLDGMFDPQHPRYKEASEFRALIETDPDAKTVFDRAVGLEGLKRQWGVHAAGVIM
SSEPLLDIIPIMKREQDGQIVTQFDYPACEALGLIKMDFLGLRNLTIISDALDNIRSNRG
EELDLEHLALDDRAAYDLLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVIALYRPG
PMGANSHTNYALRKNGQQPITPIHPELEEPLRDILDTTYGLIIYQEQVMAIAQKVAGFSL
GQADILRRAMGKKKKSELDKQYEGFSGGMKERGFSDEAIKALWDILLPFSDYAFNKAHSA
AYGLVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVSESIAF
FAAVGEDIRFGLGAVRNVGSNVVDGIIEARKDGTFTSFHDFLDKVPLHVANKRTVESLIK
AGAFDSLGNTRRALLEIHEDAVEAAVDRKRNEAQGAIGFDFDSLYDEPEAMPAKVPERPE
FTKKDKLAFEREMLGLYVSDHPLAGLEVALAKHASISIHDLNNSEDLQDGDQVTVAGLVT
SVQHRVAKASGNPYGMITIEDFNGEVTVMFMGKTYTEFQHVLQQDAILAVRGRVSRRDDG
LNLHAQSAFAPDVGSFDAAGPLSLLVAEQRATERVMTDLAEVLRRHAGDTEVLLRVHRGS
SAKVFEVPMPVRVSADLFGDLKSLLGPSCLG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgactccttcgtccacctccatgtgcacagcgagtactcgatgctggacggg
gccgccaagatcaacgcgatgacgcagactgccgccgattacgggatgccggcgatcgcc
gtcaccgaccacggcaacaccttcgccgctttcgagttctacaacgccgcccgggcatcc
ggggtcaagccgatcatcggcctcgaggcgtacgtcaccccggggacgcaccgcagcgac
aagtcccgggtctcctggggatccccggaccagaagaacgacgacgtctccggtggcggc
gcgtacacccacatgacgctgtggagcgagagcaccgaagggatgcacaacctcttccga
ctcagctcgctctccagcatcgagggctactacttcaagccgcgcatggaccgcgagctg
ctgcagacctacggcaaagggctcatcgccacgaccggatgcccgtccggcgaggtgcag
acccgcctgcgcctcggccagtacgacgcggcgcgcgccgccgccgccgagttccaggac
atcttcggcaaggacaactacttcgccgagatcatggaccacggtctctccatcgagcgc
cgggtgatgaccgacctgctccggctcgccaaggacctcggcatcccgctggtcgccacc
aacgactcgcactacacgcatcagcacgaggccgacgcgcatgccgcgctgctgtgcgtg
cagtccggctccacgctcgacgatccgaaccggttcaagttcgacggcgacggctactac
atcaagaccgcgcaggagatgcgtcagctgttccgcgaccaccccgaagcctgcgacaac
acgctgctcatcgccgagcggtgccaggtggagttcaacacctccgcgaactacatgccg
cgcttcccggtccccgaaggcgagaccgaggacagctggctgatcaaggaggtcgagaag
ggcctgcactaccggtacccgaacggcatccccgacaaggtccgcaagcaagcggagtac
gagacgggcatcatcctgcagatgggcttcccggggtacttcctcgtcgtcgccgacttc
atcaactgggcgaaggaccacggcatccgcgtcggccccggccgcggctccggtgccggc
tcgatggtcgcgtacgcgatgcgcatcaccgacctcgacccgctcgagcacggtctcatc
ttcgagcgcttcctgaaccccgaccgcgtctccatgcccgacttcgatgtcgacttcgac
gaccgccgtcgtggcgaggtgatcgagtacgtcaccgagaagtacggctcggagcgggtc
gctcagatcgtcacctatggcacgatcaagtccaagcaggcactgaaggatgccgggcgc
gtgctcggcttcccgttcagcatgggggagcggctgacgaaggcgatgccgccgcccgtg
atgggcaaggacatgcccctggacggcatgttcgacccgcagcatccgcgctacaaggag
gcgagcgagttccgcgcgctgatcgagaccgacccggacgcgaagaccgtgttcgaccgg
gccgtggggctcgaggggctgaagcgtcagtggggagtgcacgccgccggcgtcatcatg
tcgagcgagccgctgctcgacatcatcccgatcatgaagcgggagcaggacgggcagatc
gtcacccagttcgactatcccgcctgcgaggcgctcggcctgatcaagatggacttcctg
gggctgcggaacctcaccatcatctcggacgcgctggacaacatccgctccaaccgcggc
gaggagctcgacctcgaacatctcgccctcgacgaccgcgccgcctacgacctgctcgcc
cgcggcgacaccctgggcgtgttccagctcgacggcgggccgatgcgctcgctgctgcgg
ctgatgaagcccgacaacttcgaggacatctccgccgtcatcgccctgtaccgcccgggg
ccgatgggtgcgaactcgcacacgaactatgcgctgcgtaagaacgggcagcagccgatc
accccgatccatcccgagctcgaggagccgctgcgcgacatcctcgacacgacctacggc
ctgatcatctatcaggagcaggtcatggcgatcgcgcagaaggtggccgggttcagtctc
ggacaggccgacatcctgcgccgcgccatgggcaagaagaagaagtccgagctggacaag
cagtacgagggcttctccggcggtatgaaggagcgcggcttcagcgacgaggcgatcaag
gcgctgtgggacatcctgctgccgttctcggactacgcgttcaacaaagcgcactccgcc
gcgtacgggctggtctcctactggaccgcctacctgaaggcccactatccggccgagtac
atggccgcgctgctcaccagcgtcggcgactcgaaggacaagatggcgctctacctcaac
gagtgccgccggatgggcatcaaggtgctgccgccggacgtctccgagtcgatcgcgttc
ttcgcggccgtcggcgaggacatccgcttcggtctcggggccgtgcggaacgtcggcagc
aacgtggtcgacggcatcatcgaggcgcgcaaggacggcacgttcacctccttccacgac
ttcctcgacaaggtgcccctgcacgtcgcgaacaagcggaccgtcgagtcgctgatcaaa
gccggtgcgttcgactcgctcggcaacacgcgccgggcgctgctggagatccacgaggat
gccgtcgaggcggccgtcgaccgcaagcgcaacgaggcccagggggccatcggcttcgac
ttcgacagcctctacgacgagcccgaggcgatgcccgccaaggtgccggagcgaccggag
ttcaccaagaaggacaagctcgccttcgagcgcgagatgctcgggctgtacgtctcggat
catccgctcgccgggctcgaggtcgcgctcgccaagcacgcctcgatctcgatccacgac
ctgaacaactcggaggatctccaggacggcgatcaggtcaccgtcgccgggctggtcacc
agcgtgcagcaccgggtcgcgaaggccagcggcaacccgtacggcatgatcacgatcgaa
gacttcaacggcgaggtcaccgtcatgttcatgggcaagacgtacaccgagttccagcac
gtgctgcagcaggacgcgatcctcgccgtgcgcggccgggtgtcccgtcgcgacgacggc
ctgaacctgcacgcgcagtccgcgttcgcgcccgatgtcggctccttcgacgccgccgga
ccgctgtcgctcctggtcgcggagcagcgcgccacggagcgggtgatgaccgatctcgcc
gaggtgctgcgccggcacgctggcgacaccgaggtgctgcttcgcgtgcaccgcggctcc
tccgccaaggtgttcgaggtgccgatgccggtccgcgtgtcggcggacctgttcggcgac
ctgaagtccctgctcgggccgtcctgcctcggctga
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