Microbacterium neungamense: JSY13_09530
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Entry
JSY13_09530 CDS
T09212
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JSY13_09530
09124 Replication and repair
03420 Nucleotide excision repair
JSY13_09530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnf03021
]
JSY13_09530
03400 DNA repair and recombination proteins [BR:
mnf03400
]
JSY13_09530
Enzymes [BR:
mnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JSY13_09530
Transcription machinery [BR:
mnf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JSY13_09530
DNA repair and recombination proteins [BR:
mnf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JSY13_09530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UWF77041
LinkDB
All DBs
Position
1970631..1972271
Genome browser
AA seq
546 aa
AA seq
DB search
MSDGPLIVQSDRTVLLEVAHADAETARHELAIFAELERAPEHIHTYRITRLGLWNARAAG
HTAEDMLETLERWSRFPVPPSVAVDLRETVNRYGRLVIERDEEGRLILRSSDPAVLTQVA
GNKRIQPLLIGHPSPDAYVVDAWARGQIKQELLKIGWPAEDLAGYTPGTPHEIELAEDGW
QMRPYQREAVEAFAKDGSGVVVLPCGAGKTIVGAGAMANTKTTTLILVTNTVSARQWRDE
LLKRTSLTPEEIGEYSGQAKEVKPVTIATYQILTAKRKGQYAHLALLDAMDWGLIVYDEV
HLLPAPVFKLTADLQARRRIGLTATLVREDGREGDVFSLIGPKRFDAPWKQIEAQGFISP
AACYEVRVDLPPGDRLEYAAATDEERYRLAASAPAKIKAVRDLIAKHPGERILVIGQYLD
QLDTLSESLNAPQITGATPVDEREELYRQFREGEISLLVVSKVANFSIDLPEASVAIQVS
GSFGSRQEEAQRLGRLLRPKQSGHTASFYTLIARDTVDQDYAQNRQRFLAEQGYSYTIMD
ADALAA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggccctttgatcgtgcagagcgatcgcaccgtcctgctcgaggtggcgcac
gccgacgccgagacggcccggcacgagctggcgatcttcgcggagctggagcgcgcaccc
gagcacatccacacctaccggatcacgcgtctgggcctgtggaacgcacgggccgccggg
cacaccgcggaggacatgctggagaccctggagcgctggtcgcgcttcccggtcccgccg
tcggtggcggtcgatctgcgcgagaccgtgaaccgctacggccggctcgtgatcgagcgc
gacgaggagggccggctgatcctgcgctccagcgacccggccgtgctcacgcaggtggcc
ggcaacaagcgcatccagccgctgctgatcgggcacccctcgccggatgcctacgtggtg
gacgcctgggcccggggccagatcaagcaggagctgctgaagatcggctggccggcggag
gacctggccggctacacgccgggcacgccgcacgagatcgagctggccgaggacggctgg
cagatgcgtccgtaccagcgcgaggcggtggaggcgttcgcgaaggacggctccggggtc
gtggtgctgccgtgcggtgcggggaagaccatcgtcggcgccggcgccatggcgaacacg
aagacgaccacgctgatcctggtgacgaacaccgtctcggcccggcagtggcgcgacgag
ctgctcaagcggacctcgctcacgcccgaggagatcggcgagtactccggccaggccaag
gaggtcaagccggtcaccatcgcgacgtaccagatcctcaccgccaagcggaagggccag
tacgcgcacctcgccctgctggacgccatggactggggcctcatcgtgtacgacgaggtg
cacctgctgccggcgccggtgttcaagctcaccgccgacctgcaggcgcggcgccggatc
gggctgaccgcgaccctggtgcgggaggacggccgggagggtgacgtgttcagcctgatc
gggcccaagcggttcgacgcgccgtggaagcagatcgaggcgcaggggttcatctccccc
gccgcctgctacgaggtgcgcgtcgacctgccgccgggcgaccggctcgagtacgcggcg
gcgaccgacgaggagcggtaccggctcgcggcatccgcccctgccaagatcaaggccgtg
cgcgacctgatcgcgaagcaccccggcgagcgcatcctcgtgatcggccagtacctcgac
cagctggacaccctgtccgagtcgctgaatgcgccgcagatcaccggggcgacgccggtg
gacgagcgggaggagctgtaccggcagttccgcgagggcgagatctcgctgctggtggtg
tcgaaggtcgcgaacttctcgatcgacctgccggaggcgtccgtcgcgatccaggtgtcc
ggctcgttcgggtcgcggcaggaggaggcgcagcggctggggcggctgctgcggccgaag
cagtccggacacaccgcgagcttctacacgctgatcgcccgcgacaccgtcgaccaggac
tacgcccagaaccggcagcgcttcctcgccgagcagggctacagctacaccatcatggac
gccgacgccctcgccgcctga
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