Monoraphidium neglectum: MNEG_11031
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Entry
MNEG_11031 CDS
T05028
Name
(RefSeq) ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mng
Monoraphidium neglectum
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mng03019
]
MNEG_11031
03041 Spliceosome [BR:
mng03041
]
MNEG_11031
03036 Chromosome and associated proteins [BR:
mng03036
]
MNEG_11031
Enzymes [BR:
mng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNEG_11031
Messenger RNA biogenesis [BR:
mng03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
MNEG_11031
mRNA cycle factors
Common to processing body (P body) and stress granule
MNEG_11031
Spliceosome [BR:
mng03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
MNEG_11031
Chromosome and associated proteins [BR:
mng03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
MNEG_11031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
25728253
NCBI-ProteinID:
XP_013895952
UniProt:
A0A0D2JB07
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MEDPFEQDEARKAESDAVFGKENTGINFDAYEDIPVETSGHDVPAHVDTFEELDLGEGLM
ANIRRCKYTKPTPVQKYAIPIGLGGRDMMACAQTGSGKTAAFCFPIIAGLLKSGYQPTGR
QRKAFPAALVLAPTRELTSQIFDEARKFSYQSGIRPVVIYGGAPVVNQLREIERGCDILV
ATPGRLSDLIERARVSLSAIRYLALDEADRMLDMGFEPQIRRIVEGEDMPPAGHRQTMLF
SATFPKEIQRLAADFLHDYIFLTVGRVGSSTDLIAQHIEYMQPDQKKETVLDCVNTVEGL
TLVFVETKRGADQLEDYLLRHSLPATSIHGDKTQAEREMALRAFRSGKCRILVATDVAAR
GLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGKKGLATAFFTDEDIGLARSLNEGRVCA
RCGLLFRAAGLPARRAA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccttttgagcaggacgaggcccgcaaggccgagtccgacgccgtctttggc
aaggagaacacgggcatcaacttcgacgcctacgaggacatccccgtcgagaccagcggc
cacgacgtgccggcgcacgtggacacttttgaggagctggacctcggcgagggcctcatg
gccaacatccgccgctgcaagtacaccaagcccacgcccgtccagaagtacgcgatcccg
atcggcctcggcggccgcgacatgatggcgtgcgcgcagacggggtcgggcaagaccgcg
gcgttctgcttccccatcatcgccggcctgctcaagtcgggctaccagcccaccggccgc
cagcgcaaggccttcccggccgcgctggtgctggcgcccacgcgcgagctgacgagccag
atctttgacgaggcccgcaagttcagctaccagagcggcatccgccccgttgtcatctac
ggtggcgcccccgtcgtcaaccagctgcgcgagattgagcgcggctgcgacattctggtg
gccacccccgggcgcctgtcggacctgatcgagcgcgcgcgcgtgagcctcagcgccatc
cgctacctcgcgctcgacgaggcggaccgcatgctggacatgggcttcgagccccagatc
cgtcgcatcgtggagggcgaggacatgccgccggctggccaccgccagaccatgctcttc
tccgccactttccccaaggagatccagcgcctggcggccgacttcctgcacgactacatc
ttcctgacggtcggccgcgtgggcagcagcacggacctcatcgcgcagcacatcgagtac
atgcagcccgaccagaagaaggagaccgtgctcgactgcgtcaacacggtcgagggcctg
acgctggtgtttgttgagaccaagcgcggcgccgaccagctggaggactacctcctgcgc
cacagcctgcccgccacctccatccacggggacaagacgcaggccgagcgcgagatggcg
ctgcgcgccttccgcagcggcaagtgccgcatcctggtggcgaccgatgtggcggcgcgc
ggcctggacatcccgcacgtcacccacgtcatcaactacgacctgcccaaggacatcgac
gactacgtgcaccgcatcggccgcacgggccgcgccggcaagaagggcctggccacggcg
ttcttcacggacgaggacatcggcctcgcccgctccctcaacgagggacgtgtgtgtgcg
cgttgcgggcttctttttcgcgccgcaggactgcctgcacgccgagccgcctaa
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