KEGG   Monoraphidium neglectum: MNEG_1956
Entry
MNEG_1956         CDS       T05028                                 
Name
(RefSeq) putative PRP4 pre-mRNA processing factor 4 like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mng  Monoraphidium neglectum
Pathway
mng03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MNEG_1956
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mng03041]
    MNEG_1956
Spliceosome [BR:mng03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    MNEG_1956
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Gbeta WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_WDR75_1st PRP4 Beta-prop_EML WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_TEP1_C ANAPC4_WD40 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_SPT8 MRFAP1 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 25734834
NCBI-ProteinID: XP_013905019
UniProt: A0A0D2MTV8
LinkDB
Position
Unknown
AA seq 520 aa
MYTAQRAPPPRSTTTRQASRREREEQEKLLAEFELRRKIRATLVPTDDAKVREMLRQLGE
PVTLFGEREMERRDRLKKIIAERDVTGLEGAPVTGALVLEEQVVVQKEVFYTEGTQELQQ
ARMEVAVWSLGRAAARVRAAKRLREDLGSLKAAKASREASEAAAKKLAQQSSEIGDDRPV
GGCAFSPDGAVLAACGWGGAVNLWRATDSSNVARLRGFRAHPERATGIAWHPQATLGQSE
EAANLLTGSADGTAALFSMAGQQLRMLEGHTDRLGRVAWHPMGRHVATPSFDSTWRLWDA
ETGACLLEQEGHSRGVYAVAFHPDGSLAGSVGLDAIGRVWDCRTGRSVQVLEGHVKQVLC
IDFAPNGYQIATGSDDHTVRVWDLRKRACAYCLPAHRSLVSAVRWQPDAGHYLLTASYDA
TIKVWSTRDWSLLKVLAGHEGKVMAADIAPQPPAGAAQQRQQQQHREDGGGEMDVDGEEG
AAAGGAPQHLIGSAGYDRTVKLWAPQDTPDLFGGDDGLPF
NT seq 1563 nt   +upstreamnt  +downstreamnt
atgtacactgcacaacgtgctccacccccgcgctcgacgacgacacgccaggcgagccgc
cgcgagcgggaggagcaagagaagctgctcgccgagtttgagctgcgccgcaagatccgc
gcgacgctcgtgcccaccgatgacgccaaagtgcgggagatgctgcggcagctgggggag
cccgtcacgctctttggagagagagagatggagcgccgcgaccgcttgaagaagatcata
gcagagcgtgacgtgacggggctggagggggcgccggtgacgggggcgctggtgctggag
gagcaggtggtggtgcagaaagaggtgttctacaccgagggcacccaggagctgcagcag
gcgcgcatggaggtagctgtgtggtccttggggcgggcagcggcgcgggtgcgggcggcg
aagcggctgcgggaggatctcgggtcactcaaggccgccaaggcgtcccgcgaggcgtcc
gaggcggctgcgaagaagctggcacagcagagctcagagatcggggacgaccgccccgtg
gggggctgcgcgttcagccctgacggcgcggtgctggcggcctgcggctggggcggcgcg
gtcaacctgtggcgggcgacagacagctcaaacgtggcgcgcctgcgaggcttcagggcg
cacccggagcgcgcgacaggcatcgcgtggcacccacaggcgacgctggggcagtctgag
gaggccgccaacctgctgacaggcagcgccgacggcaccgcggcgctcttcagcatggcg
gggcagcagctgcggatgctggagggccacacggaccggctgggccgcgtcgcgtggcac
cccatgggccggcacgtggccacccccagctttgacagcacctggcggctgtgggacgcg
gagacgggcgcctgcctgctggagcaggaggggcacagccgcggggtctacgcggtggcc
ttccacccagacggcagcctggcagggtctgtggggctggacgcgataggccgggtgtgg
gactgccgcacaggccgcagcgtgcaggtgctggagggtcacgtgaagcaggtgctctgc
atcgattttgcacccaacggttatcagattgccacaggcagcgacgaccacaccgtgcgc
gtgtgggacctgcgcaagcgggcctgcgcgtactgcctgcccgcgcaccgctcgctggtc
agcgcggtgcggtggcagccggacgcggggcactacctgctcaccgccagctacgatgcc
accatcaaggtctggtcgacgcgggactggtcgctgctcaaggtgctggccgggcacgag
ggcaaggtcatggcggcagacatcgcaccgcagccgccggccggcgcggcgcagcagcgg
cagcagcagcagcatcgggaggacgggggcggcgagatggacgtggacggggaggagggg
gccgcagcgggcggggcgcctcagcacttgattgggtcggccgggtacgaccgcacggtc
aagctctgggcgccgcaggacacaccagacctatttggcggcgacgacgggctgccgttc
tga

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