Monoraphidium neglectum: MNEG_5458
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Entry
MNEG_5458 CDS
T05028
Name
(RefSeq) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mng
Monoraphidium neglectum
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mng03016
]
MNEG_5458
Enzymes [BR:
mng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MNEG_5458
Transfer RNA biogenesis [BR:
mng03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MNEG_5458
Prokaryotic type
tRNA splicing ligases
MNEG_5458
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
25738335
NCBI-ProteinID:
XP_013901517
UniProt:
A0A0D2JUF1
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MPDVHSGYGFAIGNVAAFDMDDPQAIVSPGGVGFDINCGVRLIRTNLTEEDVEPVKEALT
QSLFDHIPVGVGGQGIIPTTMADLEAALEMGVDWSLRRADVSLRAKKRGLPQMGTLGAGN
HYAGLGRLMDQPRGWAASAVRSARTQIEVVEEIFDEWVARKMGIDQKGQVCVMIHSGSRG
LGHQVATDALIEMERAMARDRIAVNDRQLACARIGSREGAAYLAAMAAAANYAWVNRSSM
TFLARQAFAKTFGSTPDDLDMALIYDVSHNIAKAREQERARATPFRRVEEHTVDGRPRRL
LVHRKGSTRAFPPHHPLIPLDYQATGQPVLIGGTMGTCSYVLTGTDQGFKETFGSTCHGA
GRARSRHSARSALDYREVLDALKAKGVAIRVASPSLVMEEAPESYKDVSAVVETCHAVGI
SKKAVKLRPIGVVKG
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgtccacagcggctacggctttgcaataggcaacgtggcagcctttgacatg
gatgacccccaggcgatcgtgtcgccggggggcgtagggttcgacatcaactgcggggtg
aggctcatcaggacaaacctgacagaggaggatgtcgagcccgtcaaggaggccctcaca
caatctctcttcgaccacatccctgtgggagtgggcgggcagggcatcatccccaccacc
atggccgacctggaggccgccctggaaatgggcgtggactggagcctcaggcgcgcggat
gtttcgctgcgcgccaagaagcggggcctgccgcagatggggacactgggggccggcaac
cactatgcagggctgggccgcctgatggaccagccgcggggctgggccgcttcggctgtg
aggtccgctcgaacacagatcgaggtcgtggaggagatttttgatgagtgggtggcccgc
aagatgggcatcgatcagaagggacaggtgtgcgtcatgatccacagcggcagcaggggg
ctaggccaccaggtggccactgacgcgcttattgagatggaaagggcgatggcacgggac
aggattgcggtcaacgacaggcagctggcctgcgcgcggatcggcagtcgcgagggcgcg
gcctacctggccgccatggcggctgcggccaactacgcctgggtcaaccgcagcagcatg
accttcctggcgcggcaggcgtttgccaagacgttcggctcgaccccggatgatctggac
atggccctgatctatgacgtcagccacaacatcgccaaggcgcgcgagcaggaacgggct
agggcgacgccgttccgccgcgtggaggagcacaccgtggatgggaggccccgccgcctg
ctggtgcaccgcaagggctccacccgcgccttcccgccgcaccaccccctgatacccctg
gactaccaggccacgggccagccagtgctgatcggcggcaccatgggcacctgctcctac
gtcctcaccggcactgaccagggcttcaaggagaccttcggctccacctgccacggcgca
ggccgcgcccgcagccgccacagcgcgcgcagcgccctggactaccgcgaggtgctggac
gcactgaaagccaaaggggtcgccatacgcgtggcttcccccagcctggtgatggaggag
gcccccgagagctacaaggacgtcagcgccgtggtggagacctgccacgctgtcggcatc
agcaagaaggccgtcaagctgcggcccatcggcgtggtcaagggctga
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