Monoraphidium neglectum: MNEG_9262
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Entry
MNEG_9262 CDS
T05028
Name
(RefSeq) putative U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
mng
Monoraphidium neglectum
Pathway
mng03018
RNA degradation
mng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MNEG_9262
09123 Folding, sorting and degradation
03018 RNA degradation
MNEG_9262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mng03019
]
MNEG_9262
03041 Spliceosome [BR:
mng03041
]
MNEG_9262
Messenger RNA biogenesis [BR:
mng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MNEG_9262
mRNA degradation factors
5'-3' decay
Lsm complex
MNEG_9262
Spliceosome [BR:
mng03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MNEG_9262
Complex C
U2 snRNP components
MNEG_9262
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
25742137
NCBI-ProteinID:
XP_013897721
UniProt:
A0A0D2MD64
LinkDB
All DBs
Position
Unknown
AA seq
144 aa
AA seq
DB search
MLFYSYFKTLVGKEVSGALALGIGPPRAGGSSGWKTAVLPKQRMRPMLPMLLLALKLLHL
RAADEVTVELKNDLAITGVLHSVDQYLNIKLTSTRVVDEAKYPHMMSVRNCFVRGSVVRY
VHLPPGSVDVEILHDATRREAKGA
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgctgttctactcgtacttcaagacgctggtcgggaaggaagtgagcggtgccctggca
ttagggatagggcctccgagggctggcggcagctcaggctggaagacagcagtgctaccg
aagcagcgcatgcgcccgatgctgccgatgcttctgctggcgctcaagctgctgcacctg
cgtgctgcagacgaggtcaccgtcgagctgaagaatgacctggccatcacgggggtgctg
cactctgtggaccagtatctcaatatcaagctcacatccacgcgggtggtggacgaggca
aagtacccccatatgatgtccgtccgcaactgcttcgtccgcggctccgtagtccgctac
gtgcacctaccccctggcagcgtagatgtggagattctgcacgacgcaacgcgcagggag
gccaagggcgcgtga
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