KEGG   Monoraphidium neglectum: MNEG_9875
Entry
MNEG_9875         CDS       T05028                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
mng  Monoraphidium neglectum
Pathway
mng03013  Nucleocytoplasmic transport
mng03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MNEG_9875
  09122 Translation
   03013 Nucleocytoplasmic transport
    MNEG_9875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mng03019]
    MNEG_9875
   03041 Spliceosome [BR:mng03041]
    MNEG_9875
Messenger RNA biogenesis [BR:mng03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     MNEG_9875
Spliceosome [BR:mng03041]
 Complex C
  Other components
   EJC/TREX
    MNEG_9875
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    MNEG_9875
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_Aladin EIF3I Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR35_TULP_N CFAP251_N Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Tricorn_2nd WDR90_beta-prop_4th Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_ELP1_1st PROPPIN DUF1513 Beta-prop_DCAF4 MIOS_WD40
Other DBs
NCBI-GeneID: 25742750
NCBI-ProteinID: XP_013897109
UniProt: A0A0D2M3D9
LinkDB
Position
Unknown
AA seq 338 aa
MAPQLEYTKRELHGHRKAVQALAWAHTGRKLASAGADECVRTWNVELSAGAKAERCDLAL
MSQGGAVVAVEWHPKREDQLASLTDKYLRLWDTRAASKPAVAVSVGYTSHMAWHPEGNII
AVTNYKANEVAFVDVRKGAVLGQYVPRDQYLNALRFLRDGSTLLVGCSSGDVEAVRVRPD
FKGAEAGGTLQGHIQETTALALDPSNKHLATCGYDALVTIWDLESATAVATVPSIEYAVW
DVAISCDGSRLAYAQEKGPVGVVSVPSGRVEGTVSAAASHCVAWNPKHAHILAFGCDDAG
VWNNEGRHTEAGGPVGLAFFGSSGGGGGGGGGGGTRGR
NT seq 1017 nt   +upstreamnt  +downstreamnt
atggcgccgcagctagagtacactaagcgcgagctccacggccatcgcaaggccgtgcag
gcgctggcatgggcccacaccggccgcaagctcgcgagcgcgggcgccgacgagtgcgtc
cggacatggaacgtcgagctcagcgcgggcgccaaagccgagcgctgcgacctggccctc
atgagtcaggggggcgcggtggtggcggtggagtggcacccgaagcgggaagaccagctg
gcgtcgctgactgacaaatacctgaggctctgggacacgcgcgcggccagcaagccggcg
gtggccgtcagcgtcggctacacgtcgcacatggcgtggcacccggagggcaatatcata
gctgtcacaaattacaaagcgaacgaggtggctttcgtcgacgttcgcaaaggggcggtg
ctcgggcaatatgtgccccgtgaccagtacctcaatgcgctccggttcctgcgcgacggc
tccacgctgctcgtgggctgcagctcgggcgacgtggaggcggtgcgggtgcggccggac
ttcaagggcgcggaagccggggggacgctgcaggggcacatacaggagaccacggcgctg
gccctcgacccctccaacaagcacctggccacctgcggctatgacgccctggtcacgatc
tgggacttggaaagcgccaccgccgtggccacggtgccgtcgatcgagtacgcggtgtgg
gacgtcgccatcagctgcgacggcagccggctggcgtacgcgcaggagaagggccccgtg
ggcgtcgtgtccgtgcccagcgggcgcgtcgagggcacagtcagcgccgccgcgtcgcac
tgcgtcgcgtggaacccgaagcacgcgcacatcctcgcgtttgggtgcgacgacgcgggg
gtgtggaacaatgaggggcggcacacggaggcgggggggccggtggggctggcgttcttt
ggcagcagcggcggcggcggcggcggtgggggcggcggcggcactcgtgggaggtaa

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