Marinobacter nanhaiticus: RE428_08640
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Entry
RE428_08640 CDS
T10288
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mnk Marinobacter nanhaiticus
Pathway
mnk03020
RNA polymerase
Brite
Enzymes [BR:
mnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RE428_08640 (rpoC)
Transcription machinery [BR:
mnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RE428_08640 (rpoC)
DNA repair and recombination proteins [BR:
mnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RE428_08640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BES69846
LinkDB
All DBs
Position
945702..949916
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLLKSQNQKQEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALANVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFIVIEPGMTTLERGQLLNDEQYYEALEEFGDEFDARM
GAEAVKALLEDIDLQGEVDQLREEIPQTNSETKIKKLSKRLKLLEAFLFSGNRPGDMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFAKLEHRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERKNAQGEGRVFADTKEVHRAYGAG
KVDLQAKIKVRVKEVVRDEETGELSESYNIVDTTVGRALLFDIVPDGMPFEIVNKPMVKK
AISNLINVCYRTVGLKESVIFADQLMYTGFHYATVSGTSIGVNDFEIPPEKYEMISAAED
EVLEIESQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLSKEEVFDAEGKPLKDDDG
ETVYQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTENDCGTDEGLLMTPHIEGGDV
VVPLGDRVLGRVTARDVFTPTDKENAVVPSGTLLDEKTIEMVERAGVDEIWVRSAITCDT
KHGVCSMCYGRDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNI
QVKHGGTVRLHNLKSIEKADGTLVVVSRSSALAIADEQGREREWYKLPYGAMLSVKQGDV
VDAGAVVAKWDPHTHPIIAEGNGTAQFVGMDQGITVRTQTDEMTGLSTVQVIDPKERPAA
GKDIRPMIQLVDEKGEEIVLPGGSPAQYFLPANALVTLSNGGKVEIGDVVARIPQESSKT
RDITGGLPRVADLFEARRPKEPSILAEITGTVSFGKETKGKKRLVITPKDGDPYEVLIPK
YRQLNVFEGETVEKGEVIADGPSNPHDILRLLGVVELAKYITNEIQDVYRLQGVVINDKH
IEVIVRQMLRKVEIIDAGDTAFIAGDNVEYHQVIEENAKADAEDKQPAKFERLLLGITKA
SLATDSFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERRRK
RDTAESQGVTAEDVVEALSAELNR
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatcttctcaagagccagaaccagaagcaggagttcgacgccatc
cgaatcggattggcttctcctgacatgattcgttcatggtccttcggtgaagtgaaaaag
ccggagaccatcaactaccgtacgttcaaacctgagcgtgacggtcttttctgcgccaag
atctttggtccgatcaaggactacgagtgcctgtgtggtaagtacaagcgtctgaagcac
cgtggcgtcatctgtgaaaagtgcggcgttgaagttgcgcttgccaacgtccgtcgcgag
cgcatgggacacatcgagctcgccagcccggtggcccatatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgagtcctttatcgttatcgagccgggcatgaccactctggagcgtggccagctgctg
aatgacgaacagtactacgaagcgctggaggagttcggtgacgagttcgatgcccgcatg
ggggctgaagccgttaaggccctgctggaagatatcgacctccagggcgaagtcgaccag
ctgcgcgaggaaattccgcagactaactccgaaaccaagatcaagaagctgagcaaacgc
ttgaagttgctcgaagcgttcctgttctccggtaaccgtccgggcgacatgatcatgacc
gtacttccggtcctgccgccggatctgcgtccgctggtgccgctcgatggcggtcgtttc
gcaacgtccgacctgaacgacctgtaccgccgggttatcaaccgcaacaaccgcctcaag
cgcctgctcgagctcaacgcgccggatattatcgtgcgcaacgaaaagcggatgctgcag
gaagcggttgacgcgctgctggacaacggtcgtcgcggccgtgccattaccggtaccaac
aagcgtccgctgaagtccctggctgacatgattaagggtaagcagggccgtttccgccag
aacctcttgggtaagcgggtcgactattccggtcgttcggttatcgtggtcggtccgtac
cttcggctgcaccagtgtggtctgcccaaaaagatggcgctggagctgttcaagcccttc
atctttgccaagctcgagcaccgtggactggcgaccacgatcaaggcggccaagaagatg
gttgagcgcgaggaagccgtggtctgggacatcttggacgaggttatccgcgagcatccg
atcctgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgtttgagccggtg
ctgatcgaaggtaaggccatccagctgcacccgctggtctgtgcggcctacaacgccgac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctcgaagcc
cgtgcgctgatgatgtccaccaacaacgtgctgtcgccggctaacggtgagccaatcatc
gtgccgtcccaggatgttgtactgggtctgtactacatgactcgtgagcgcaagaacgct
cagggtgaaggccgtgttttcgccgataccaaggaagttcatcgtgcctacggtgccggc
aaagtggatcttcaggccaagatcaaggttcgcgtcaaggaagtcgtgcgcgacgaggaa
accggcgagttgagtgaaagctacaacatcgtcgacaccaccgtcggtcgtgcgttgctg
ttcgatatcgtgccggatggtatgccgttcgagatcgtcaacaagccgatggtcaagaag
gcaatctccaacctgatcaacgtgtgctaccgcaccgtgggtctgaaggagtctgtcatc
ttcgccgaccaactgatgtacaccggtttccattatgcaaccgtgtctggtacgtccatc
ggcgtgaacgacttcgaaattccgcccgagaagtacgagatgatcagtgcggcagaggac
gaggtactggagatcgaatcccagtatgcctctggtctgctgacgcagggcgagaagtac
aacaaggtgatcgacatctggtcccgtgccaatgacaaggtgtccaaggcgatgatggag
cgcctctcgaaagaagaggtgttcgatgcggaaggcaagccgctcaaggatgacgatggc
gaaacggtttaccaggagtctttcaactccgtctacatgatggcagattccggtgcgcgg
ggttccgctgcccagatccgtcagttggccggtatgcgggggttgatggcgaagccggat
ggctcgatcatcgagacgccgatcactgcgaacttccgtgaaggtctgaacgtactccag
tacttcatctcgacccacggtgcgcgtaagggtttggctgataccgcactgaagaccgcg
aactccggttacctgacccgtcgtctggtggatgtctcccaggatctggtggtgaccgaa
aatgattgcggcaccgacgaaggtctgttgatgacgccgcacatcgaaggcggcgacgtt
gtcgtaccgctgggcgatcgtgtgctgggtcgagttaccgcgcgtgatgttttcacgccg
accgacaaggaaaacgctgtcgtaccgtcaggtacgctgctggacgagaagaccatcgaa
atggtcgagcgtgccggtgtggatgagatctgggtgcgctctgcgatcacctgtgacacc
aagcacggcgtctgctccatgtgttacggacgcgacctggcacgtggtcaccaggttaac
gtcggtgaggccgtcggtgtcatcgcagcccagtccatcggcgagccgggtacccagctg
acgatgcggacgttccacatcggtggcgcggcgagccgggcgtctgcggtggacaacatc
caggtcaagcatggtggtaccgtgcgtctgcacaacctgaagtccatcgagaaggctgac
ggtacgttggtcgtggtctcgcgttcttctgcgttggcaatcgccgacgagcagggtcgt
gaacgtgagtggtacaagctgccttacggcgccatgctgtcggtgaagcagggcgatgtg
gtggatgccggcgcagttgtcgccaagtgggacccgcatacccacccaatcatcgctgaa
gggaacgggacggcgcagttcgtcggtatggaccagggcatcactgtccgcacccagact
gatgaaatgactggcttgtccacggttcaggtaattgacccgaaagagcgtcctgcagcg
ggcaaagacatccgtccgatgatccagttggtcgatgagaagggtgaggaaatcgttctg
ccaggcggcagcccggcgcagtacttcctgccggctaacgcgctggtcaccctgagcaac
gggggcaaggtcgaaattggtgatgttgttgcccgtatcccacaggaaagctcgaagacc
cgggatatcaccggtggtctgccgcgggttgccgacttgttcgaggcgcgtcgtccgaag
gagccgtccattctggcggaaatcaccggtaccgtgtccttcggtaaagagaccaagggt
aagaaacgtctggtgatcacgccgaaggatggcgatccgtacgaggtgttgattccgaag
tatcgccagctcaacgtcttcgaaggtgagactgttgaaaagggcgaggttatcgcggat
ggtccttccaacccgcacgatatcctgcgcctgctgggtgtggtggaactcgccaagtac
atcaccaacgagatccaggacgtctaccgcctgcagggcgttgtgatcaacgacaagcac
atcgaggttatcgtacgtcagatgttgcgtaaggttgagatcatcgacgcgggcgatacc
gcctttatcgccggtgacaacgttgagtaccaccaggtgatcgaagagaacgccaaggca
gatgccgaagacaagcagccggccaagttcgagcgcctgctcctcggtattaccaaggca
tccctggcgaccgactccttcatctcggcggcgtcgttccaggaaaccacccgcgtgctc
accgagggcgcggtcacgggcaagcgggattatctgcgcggcttgaaggaaaacgttgtc
gtaggccgactgattccggcaggtaccggtctcgcctatcacagcgagcgtcgtcgcaag
cgcgatactgctgaaagccagggtgtaacggctgaagatgtggtagaagcgctgagcgcg
gagctgaatcgctag
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