Marinobacter nanhaiticus: RE428_19910
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Entry
RE428_19910 CDS
T10288
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mnk Marinobacter nanhaiticus
Pathway
mnk03018
RNA degradation
Brite
Enzymes [BR:
mnk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RE428_19910 (rne)
Messenger RNA biogenesis [BR:
mnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RE428_19910 (rne)
Ribosome biogenesis [BR:
mnk03009
]
Prokaryotic type
rRNA processing factors
RE428_19910 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BES70973
LinkDB
All DBs
Position
complement(2177458..2180904)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIEASNREQKKSNIYKGKITRIEPSLEAAFVDF
GADRHGFLPLKEISKEYFKKSPKDIDGKINIKDVLSEGQEVIIQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNARAGGISRRIEGDERAQLKEAMSGVDVPRNMGVIVRTAGIGRSSEE
LQWDLNYLTQIWQAITDAAGSRQAPFLIHQESNVIIRAVRDYLRQDIGEVLIDSEIVHED
VLSFVQAVMPSFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGQDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKHQREVE
QKVREALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCDGQGTIRGIESLA
LSIMRLIFEESAKDKTGEVRAIVPVSVATFLLNEKRKQLADIEARQEVTVLVVPNPHMDT
PHFEILRVRDDEVSAVDRTTSYQIASEFKEEETAEIQTAREQPAREEAAVKSIRPAAPAP
ASTATAAVPPQPADQQEEGLFKRLSRKISAFFNEESAEDAGRERESSGRNQSQRRDSNGG
RQDRRKSRVARDDNRGGNNNRRQSENDRRQGDSEGSNRRNRGRRSGDQQQQARSDRGGQG
DNSNKGGDRSGKRKDNRDNRGDDKRSQQGKDTQQAKDAPQGKDSQQQGKGGDDNKRRRPR
RQRNRDGSPVEPTQRRSEERKANKPDTAKVDDSSSKKEAAPLAESSSDDKSGKPPAADKQ
QDKQSAEAQKREQKPANKPETQGEKPEQAALGDTQKPAEAKPADSTPKGDAKQADAETAK
PAKEEVKSASQAPKPGTAENSAGEANKAKAEQKPAPATPVEDKATEAKVEKPATEKPTSA
AQGKSSSDKEDGEAKAPAETPKSSQPDDKGKSKSDKAEPNDKSAPAAESPKTEQKAPARK
TPAPKQEPAAQGEPSAKQEPSAKQEPSAKKELSAKEEPSSKEEPSSKEEPSSKEEPSSKE
EPLAKKGPSAKEEPAAPKEASVPKSPLGDEEPKAQKQPSEQRPEAPKASSAPKEAVDTAQ
QKGADQPKAENPKAAGPDSEKSEADTAPALTESGRAYNDPREVRKRQLAAQKEAEGKQSN
DDSKSSKG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcataaatgcaacacatcctgaagagttgcgcgttgcattggtagac
ggtcaacgacttttcgatctcgatatcgaagcgagcaatcgggaacagaagaaatcaaac
atctacaagggcaagatcacccgtatcgagcccagccttgaagccgccttcgtggacttc
ggtgccgatcgccacggcttccttcccctgaaagaaatttccaaggaatacttcaagaag
tcgccgaaagacatcgacggcaagatcaatatcaaggatgtcctgtccgaaggtcaggaa
gtcattatccaagtcgataaggaagagcgtggtaacaaaggtgccgcactcaccaccttc
atctcgctggccggccgctacctggtactcatgcccaacaacgctcgtgccggcggcata
tcacgccgcatcgaaggcgatgagcgcgcgcaactcaaagaagccatgagtggcgtggac
gtaccccgcaacatgggcgttatcgtgcgcaccgcgggtatcggccgcagctccgaggag
ctgcagtgggacctgaactacctgacccagatctggcaggccattaccgacgctgccggc
agtcggcaggcgcccttcctgatccaccaggaaagtaacgtcattatccgcgccgtgcgc
gactatctccgccaggacatcggcgaagtcctgatcgattccgagatcgtgcacgaagac
gtgctgagcttcgtgcaggcggtcatgccttccttcgaaaacaagatcaaactgtacaag
gatgagatccccctgttcagtcgctatcagatcgaaggccagatcgagaccgcgttccag
cgcgaagtgaaactgccatccggcggttcgatcgtcatcgatccgaccgaggcccttgta
tccatcgacatcaactcctctcgcgccacgaaaggccaggatatcgaggaaaccgcgctg
cagaccaacctggaagcggctgaggaaatcgcacgccagcttcgtctacgggatatcggc
ggcctgatcgtcatcgacttcatcgacatgacgccggccaaacaccagcgtgaagttgag
cagaaggtccgcgaagccctggaactggatcgtgcacgagtccaggtgggcaaaatctcg
cgcttcggacttctggaaatgtcccgtcagcgcctgcgcccctccctgggcgagacccgc
agcgaagtgtgcccgcgctgtgatggccagggcaccatccgcggtatcgagtcactggcg
ttgagcatcatgcgcctgatcttcgaagagtccgccaaagacaagaccggcgaagttcgc
gccatcgtaccggtatccgtggcgacgttcctgctcaacgaaaaacgcaagcaactggcc
gatatcgaagcccgccaggaagtgaccgtgctggtcgtgcccaatccacacatggatacg
ccgcacttcgaaatcctccgcgtgcgtgacgatgaggtcagcgctgtcgatcgcacaacc
agctatcaaatcgccagcgagttcaaggaagaggaaaccgcggaaatccagaccgcccgg
gaacagcctgcgcgcgaagaagcggccgtcaagagtattcgtccggcagcacccgcaccc
gcttcgacggcgacagcagcagtgccgcctcaacctgctgaccagcaggaggaggggctg
ttcaagcgtctgtcgcgtaagatttccgccttcttcaatgaagaatccgccgaagatgcc
ggccgtgagcgtgaaagcagcggccgcaaccagtcccagcgccgcgactccaacggcggc
cgccaggaccgccgcaagtcacgcgttgctcgcgacgacaatcggggcggcaataacaat
cgtcgtcagagtgagaacgaccgccgccagggcgatagcgaaggcagcaatcgccgcaac
cgcggccgtcgcagcggcgaccagcaacagcaggcgcgaagtgatcgcggtggccagggg
gacaatagtaataaaggtggcgaccgttccggcaagcgcaaggataatcgcgacaaccgc
ggtgatgacaagcgtagccagcaaggcaaggatactcagcaggctaaagacgccccacaa
ggcaaggacagccagcaacagggtaaaggtggcgacgacaacaagcgtcgtcgcccgcgt
cggcagcgcaaccgcgacggttcgccagtagaaccgactcagcgtcgcagcgaagaacgc
aaggccaacaagccagacacggcgaaagtcgacgactcgtcctcgaaaaaagaggccgca
ccgctcgctgagtcaagctccgatgacaagtcgggcaagcctccggcagcggacaagcag
caggataaacagtccgccgaggcccagaagcgggagcaaaagcctgcgaacaagcctgaa
acccagggtgaaaaacctgaacaggcagcccttggcgacacacaaaagccggccgaagcc
aagccagccgacagcacccctaaaggtgatgcaaagcaggctgatgcggaaacagccaaa
cctgccaaggaagaggtaaagtccgcgtcgcaagcgccgaagcctggaacggctgagaac
agcgcgggtgaggcgaacaaggccaaggccgagcagaagccagcacccgctacgcccgtg
gaagacaaggcaaccgaagcaaaggtcgaaaagccggccactgagaagcctaccagcgcg
gcgcaaggtaaatcgtcgtcagataaggaggacggggaagccaaagccccggcagagaca
ccgaaatcgtcgcagcctgacgacaagggtaaatcaaagtcggataaagccgagcctaac
gacaagtcagctccagctgcggaaagtccgaaaaccgaacagaaggcacccgcacgcaag
acacctgcgcccaagcaggaacctgcagctcagggagagccctcagccaaacaggagccc
tcagccaagcaggagccttcggccaagaaggagctctcagccaaagaagagccttcatct
aaagaagagccttcatctaaagaagagccttcatctaaagaagagccttcatctaaagaa
gagcctttagctaaaaaagggccgtccgcgaaggaagagcccgcagcccccaaggaggcc
tccgtacccaaatcgccactgggtgatgaggagccaaaagcgcagaagcagccttcagag
cagcggcctgaggcgccaaaagcatcctccgctccaaaagaggcggtcgacaccgcccaa
cagaaaggtgcggaccagcccaaggcggaaaacccaaaagcggcaggtcccgactcggag
aaatccgaagcggacaccgcgcctgcgttgactgaatccggtcgtgcctacaacgacccc
cgggaagtgcgcaaacggcaactggccgcccagaaagaggccgaaggcaagcaaagcaac
gacgacagcaagtcgtcgaagggctag
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