Marinobacter nanhaiticus: RE428_29010
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Entry
RE428_29010 CDS
T10288
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mnk Marinobacter nanhaiticus
Pathway
mnk03030
DNA replication
mnk03430
Mismatch repair
mnk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE428_29010 (dnaE)
03430 Mismatch repair
RE428_29010 (dnaE)
03440 Homologous recombination
RE428_29010 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnk03032
]
RE428_29010 (dnaE)
03400 DNA repair and recombination proteins [BR:
mnk03400
]
RE428_29010 (dnaE)
Enzymes [BR:
mnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RE428_29010 (dnaE)
DNA replication proteins [BR:
mnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RE428_29010 (dnaE)
DNA repair and recombination proteins [BR:
mnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RE428_29010 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BES71883
LinkDB
All DBs
Position
complement(3223346..3226825)
Genome browser
AA seq
1159 aa
AA seq
DB search
MPNTFVHLRVHSEYSLVDGLVRIKPFINRVAELNMPAVGLTEQSNMCSLVRFYKAAMGAG
VKPIIGADIWLANPDEPEKPFRLTLFARNETGYRHLTEIISLGYTDGQLYGVPIIDKRWI
EERSEGMIALSGAKMGDVGRALLAGKSDLARERAEYWKSLFPDAYYLELHRTGRQGDEDC
LHLSVELADALDLPVVATNDVHFLNQEDFEAHEARVCIGESRTLDDPRRDRRFSDEQYLR
SPEEMIELFSDIPEAIENTVEIARRCNVKVRMGEYFLPDYPVPEGMTMDDFFRKVSEEGL
EDRLSRTLDPDDPEYEDKRAAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG
PGRGSGAGSLVAYAQQITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
EKYGRAAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLNKAIEQEE
QLKDFLNQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSPVT
QFDKGDVEDAGLVKFDFLGLRTLTIINWALEMINPKREKQGEAPLDIGKIPLDDAPSFDM
LKKAETTAVFQLESRGMKDLIRRLQPDCLEDMIALVALFRPGPLQSGMVDDFIDRKHGRQ
PMSFPHPDYQYDGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKPEE
MAKQKQFFLDGCEKNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYT
AEFMAAVLTADMQNTDKVVTLVEECRNLKLDLVLPDVNTSAYTFTVNDEGQVVYGLGAIK
GLGEGPIQSIVEARADGGPFKDMFDFCQRVDLKRVNKRAIEALIRAGALDKMGPGRAAMM
ASIEKAVQQAGQQSRNESVGMVDMFGEMLDGTENDPFEEVRKVREWPEKQRLKGEKDTLG
LYLTGHPFDEYEREVRRFARQSIADLKPSKGSQRVAGLVVAMRTMKNKRGQTMAFVTLDD
RSARIEATLFSETFNENRDLLQSDEVVVVDGVVSHDDYSGSIKMRVSDVMDVATARQRYS
RGLQMCLNAGQLGNGLLEKLDKTLQPYRGQGCPVWIEYQSEQARTRIQLGDGWRVQPNDD
LLLNLRHLIGEQAVQLVYD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgccgaatacgtttgtacacctgcgcgttcactccgaatactccctggttgatggtctg
gtccggatcaagccattcatcaatcgcgtggctgagctgaacatgccggcggtgggcctg
accgagcaatccaacatgtgctcgctggtccgtttctataaggctgctatgggcgccggc
gtcaagccgatcattggggccgatatctggctggccaatccggatgagccggaaaaaccc
tttcgcctgaccctctttgcccgcaacgaaaccggctaccgtcaccttaccgaaatcatc
tccctgggctacaccgacggccagctgtatggcgtgccgattatcgacaagcgctggatc
gaggaacgcagtgagggaatgattgcgctctccggcgccaagatgggcgacgtgggacgt
gcgttgctggcaggcaaatccgacctggcgcgggagcgggcagagtactggaagtcgttg
ttcccggacgcctattacctcgagctgcaccgcaccggccgccagggtgacgaggactgc
ctgcatttgagtgtcgagctggctgacgccctggatttgccggtcgttgcgaccaacgat
gtgcacttcctcaaccaggaagacttcgaggcccatgaggcccgggtgtgtatcggtgag
agccgcaccctcgacgatccccgccgtgaccgccgtttcagtgacgagcaatacctgcgc
agtcctgaggaaatgatcgagctgttctcggacattcccgaggcgatcgagaatacggtg
gaaatcgcccgccgctgtaacgtcaaggtgcgcatgggcgagtacttcctgccggattac
cccgtcccggaaggcatgaccatggacgacttcttccgcaaggtatcggaagaggggctg
gaagatcgactgtcccggactttggatccggacgatccagagtatgaagacaagcgcgca
gcctactacaagcggctcaacttcgagctggatatcattatccagatggggttccccggc
tacttcctcatcgttatggacttcatcaagtgggccaagaacaacggggtaccggttggc
cccggccggggttccggtgccggttcactggtggcctacgcgcagcagatcaccgatctc
gatccgcttgaatacgacctgctgttcgagcgcttcctaaacccggagcgggtctccatg
cccgacttcgacgtcgacttctgtatggaaggccgcgaccgggtaatcgactatgtggcc
gagaagtacggccgggcagcggtttcccagatcatcaccttcggtaccatggcggccaag
gcggtcgtgcgagacgtggcgcgggtgcagggtaagtcctatggtctggcggacaagctc
tcaaagctgattcccttcgaagtggggatgaccctgaacaaggcgatcgagcaggaagag
cagctcaaggatttcctcaaccaggacgaggaagcccaggaaatctgggagatggcgctc
aagcttgagggcgtgtgccgtaacgccggtaagcatgcggggggtgtcgttatcgcaccc
accaagattaccgatttctcgcccctctattgtgatgacgagggcggtagcccggtgacc
cagttcgataagggcgacgttgaagatgccggcctggtcaagttcgacttcctcggcctg
cgaaccctgacgatcatcaactgggccctggagatgatcaatcccaagcgggagaagcag
ggcgaggcaccgctggacatcggcaagattccgctggatgacgcgccgtcgttcgatatg
ctcaagaaggccgagaccacggctgtgttccagctggaatcccgcggcatgaaagacctg
atccgccgccttcagccggactgccttgaagacatgatcgccctggtagccctgttccgt
ccggggccgctgcaatcgggcatggtggatgacttcatcgaccggaagcacgggcgccag
ccgatgtcgttcccgcacccggattaccagtatgacggcctgaagccggttctggagccc
acctacggggttatcctgtaccaggaacaggtcatgcagattgctcaggtgatggccggc
tacacgctgggcaacgcggatatgctgcgccgggcgatgggtaagaaaaagcccgaggaa
atggccaagcagaagcagtttttcctcgatgggtgtgaaaagaacggcatcgacaagacg
ctcgccgaaaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaagtcg
cactccgctgcctatgcgctggtgtcctatcagacgctttggctcaaggcacattacact
gcggagtttatggccgcggtcctcaccgccgatatgcagaacaccgacaaggtggtcacg
ctggtcgaggaatgccgcaacctcaagctcgacctcgttctgccggacgtgaacacgtca
gcctataccttcacggtgaacgacgaagggcaggtggtttatggtctgggcgcgatcaag
ggcctcggcgaagggccgatccagagtatcgtcgaggcgcgggctgacggcggaccgttc
aaggatatgttcgatttttgccagcgtgtcgacctgaagcgggtcaacaagcgtgctatc
gaagccctgatccgagctggtgctctggacaagatgggcccgggccgcgctgcaatgatg
gcgagtatcgaaaaggcagtgcaacaggccggtcagcagtcccgcaacgaatcggtcggt
atggtggatatgttcggcgaaatgctggacggcaccgagaacgatccgttcgaggaggtc
cggaaagtacgcgagtggcctgaaaagcagcgcttgaaaggcgagaaggataccctgggg
ctatacctgaccggtcatccgttcgacgaatatgagagggaagtgcgccgcttcgctcgc
cagtccatcgctgatctcaaaccaagcaagggatcgcagcgggtcgcaggtcttgtggtt
gccatgcgcacgatgaagaacaagcgtggccagacgatggccttcgtaacgttggacgat
cgctcggcgcggatcgaagccacgctgttctcggagaccttcaacgagaatcgcgacctg
ctgcagtcggacgaagtggttgtggtcgatggcgtcgtcagtcacgacgattattccggc
tcgatcaaaatgcgtgtcagcgatgtcatggacgttgccacggcccggcagcgctatagc
cgtggtctgcagatgtgtttgaacgccggccagttgggcaatggtttgctggagaaactg
gacaagacgctgcagccgtatcgcggtcagggttgcccggtctggatcgagtaccagagc
gagcaggcacgtacgcggatacagctcggcgatggctggcgggtccagcctaacgacgat
ttgctgctaaacttgcgtcatctgatcggtgaacaagcggttcagctggtttacgactaa
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