Mogibacterium neglectum: QU661_03050
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Entry
QU661_03050 CDS
T09253
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mnl
Mogibacterium neglectum
Pathway
mnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QU661_03050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnl03400
]
QU661_03050 (mfd)
Enzymes [BR:
mnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QU661_03050 (mfd)
DNA repair and recombination proteins [BR:
mnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QU661_03050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
DUF3232
AAA_22
RecG_dom3_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WLD76831
LinkDB
All DBs
Position
657392..660751
Genome browser
AA seq
1119 aa
AA seq
DB search
MKINITGVSGSRVAYYAAKEIVKKKKTMIIVSRADVAKRLRDDISFFVQDREIFVLPEED
ELQIVYEAKDNNSTIQRLRALDALCSDDDAVVIAPISAALKSIQPAKRFIDSIIDLKVGM
RIDPKELKQNLVEVGYTPSSIVEAEGEFSSRGGIIDIFSPNHTDPMRVEFFDDEIDSLRY
FDSESQISLENADSIRICPAAEFVPSERERLDVLPVIIDEYDRRLDELIVQSSDKKIADG
RIDRINELKSRITEMFKECTNVQIFSNYLKYFNIKSEMLWDYLVLSDDSNLMVYDPNRIE
TEIPECEEKTDLKKLFQRDLIVFTPFPEPIKEIDEFNRVINVTSRQIASFNGQMELFGRE
MKRLSKEGYEVHIVSADHERHERIREYLEDAKIFGHFRYDIGLLGSGMMLEDDKLCYITD
ADIFPNIRKSSKRKLRRKTKKQDFLDLHAGDYVVHEEHGIGRFEGIKTLEADGEIKDYLK
IHYSGTDVLYIPTEQMDIIQRYIGSEGKAPKLSRLSGGDWRNTKARARKAIEEIAEDLVK
LYAERELRGGYAFQHDTIWQHEFEERFPYQETDDQLQATEEIKADMEKPLPMDRLLCGDV
GYGKTEVAARAIFKCVSEGKQAVFLAPTTLLTNQHFNTLKERFEDYPFNIEMMSRFVNES
HQKKVIEGLCKGTVDLVIGTHRLLLEDISYKDLGLLVIDEEQRFGVKHKEKLKMARQTVD
VLTLSATPIPRTLNMSLTGIKNISTIEEPPQDRYPVQTFVSAEDDELMRNVIRRELDRGG
QVYVIYNRVNGINDVAKRINSLVPNATVAVGHGRMNETTLENVMLDFVEGEVDIFVATTI
IENGIDIPNANTIIILNADKLGLSQLYQLKGRVGRSNRLAYAYLLYKPERALTEVATKRL
AAIREFTEFGAGFKLAMRDLELRGAGNILGEAQHGNIAGIGYELYVKEIDKAVRRLKGEK
ITEGREEIAIEVDIPARIPAEYIKDETLKLQAYKKIAQIANHEEAEELVAELIDRYGDLP
DVTVDLIRIAEIKCLAAELGVKSISERGGHYVIEFSEENNADAFTLIVAKQKYGEQLIIS
SGSNPYLSLQKGREKPAVRILELMMTMAEARLKGLSKAE
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaatatcaccggtgttagtggaagtagggttgcctactatgcagctaaggag
attgttaagaagaaaaagacaatgattatcgtttccagagcggatgtcgctaaaaggctc
agggacgatatttctttttttgtacaggatagggaaatctttgtattacccgaagaggat
gaacttcagatagtttatgaggcaaaagacaacaactcaacaatacagagattaagagcg
ttagacgcattatgctcagatgacgatgctgttgtaatcgccccaatttcagcagcttta
aaatctattcagcctgcaaaaagattcatagattcaattatagatctcaaagttggcatg
aggattgatccgaaagaattaaaacaaaacctggtagaagttggatatactccatcctca
atagttgaagcagaaggggagtttagctcgcgtggagggataatagatatattttcacct
aaccatacggatccaatgagagttgaattttttgatgatgaaatagattcgcttagatac
tttgactcggaatcgcagatatcactcgagaatgccgattctatccgaatatgtcctgcg
gctgagtttgtgccttctgaacgagaacgccttgatgtgcttcccgtgataattgatgaa
tatgataggcgccttgatgaacttatcgttcaaagcagtgataaaaaaatagctgatggc
agaatagacagaatcaacgaacttaagagccgcattacagagatgttcaaggaatgcact
aatgtccaaatattttccaattatcttaagtactttaatataaagtccgaaatgctgtgg
gattatctagtattatcagacgattcaaacctaatggtatatgatccaaacaggatagaa
actgaaattccagaatgcgaggaaaaaactgacctcaagaaattgtttcaaagggacctt
attgtatttacaccatttccagaaccaataaaggaaatagatgaatttaacagagtcatc
aatgtaactagtaggcaaattgctagcttcaatggacagatggagctttttgggagagag
atgaaaaggctttccaaagaaggctatgaagttcacatagtttctgctgatcatgagaga
catgaacgcattcgtgagtatttagaggatgcaaagattttcggccattttaggtatgat
ataggactgcttggatctgggatgatgctcgaagacgataagctttgctacataacagat
gcagatatttttcctaatataagaaaaagttcaaaacgaaagctacgccgcaagactaag
aagcaagactttttagatcttcacgctggcgactatgttgttcacgaagaacatggaata
ggccgctttgaaggaattaagacgttggaagccgatggagaaataaaggactatttaaaa
atccactattcaggcacggatgttctatatattcctactgagcaaatggacatcatacag
cgttatataggaagtgaagggaaagctccaaagctatccagactgtcgggtggggattgg
cgcaacactaaagctagagcacgtaaggcaattgaggaaattgctgaggatcttgttaaa
ttatatgctgagcgtgaactccgtggaggctacgcatttcagcacgatactatatggcag
catgaatttgaggagagatttccgtatcaagaaactgatgatcagctgcaagctacagaa
gagataaaagcagatatggaaaaaccgctacctatggatagacttctgtgcggagatgtc
ggttacggtaagacagaagtggctgctagagcaatttttaaatgtgtctcggaaggaaag
caagcggtatttcttgctcctacaacacttttgaccaatcagcatttcaatacactaaaa
gaacgttttgaagattatccgtttaatatagaaatgatgtctaggttcgtaaatgaatca
caccaaaagaaggtgattgaaggattatgtaaaggtactgtagatttagttattggaact
catagactgctgttggaagatatatcctataaagatttaggattactagttatagatgaa
gaacagcgctttggtgtaaaacacaaggaaaagctcaaaatggcaaggcaaacagttgat
gttttgacactttccgcaactccgattccaagaactttgaacatgtcgttaacaggtatt
aaaaatataagtacaattgaggaacctcctcaagataggtatccagtacagacatttgta
tctgctgaagacgatgagcttatgagaaacgtaattaggcgtgaacttgatagaggtgga
caggtatatgtcatatataaccgcgtaaatggaattaatgatgttgcaaaacgtataaat
tcattagtaccgaatgcgacagttgcggttggacatgggcgtatgaacgaaacaacacta
gaaaatgtcatgctagatttcgtagaaggtgaagtagatatatttgtggcaacaacgatt
attgaaaatggaattgatattccaaacgctaataccataattatattaaacgcagataaa
ctcgggctttcgcagctatatcaacttaaaggtagggtaggaagatcaaatagacttgcc
tatgcgtacttactatataaaccagaaagagctttgacagaagtcgctacaaaaagactt
gcggcaataagagagtttaccgagtttggcgcaggctttaaacttgcgatgcgtgatcta
gagctcagaggagcgggaaatatcttgggagaagctcaacatggtaatatagctggaatt
ggttatgaactatacgttaaggaaattgataaggctgttagaaggttaaaaggagaaaaa
ataaccgaaggccgagaagaaatcgctatagaagtcgatatcccagcgcgcatccctgct
gaatacataaaggatgaaacacttaaactacaggcgtacaagaagattgctcagattgca
aatcatgaagaggctgaagagcttgtagcagaactgattgatcgatatggtgatttacct
gacgtaacagtggaccttattaggattgccgagattaaatgccttgcagccgagcttggt
gtaaaatccatatccgagcgtggcggacattatgttattgaatttagtgaagaaaacaat
gcggacgcattcaccttgattgtagctaagcaaaagtatggggaacagctgattataagt
agtgggagtaatccataccttagcttacagaaaggacgagaaaagccagctgtaagaatc
ttagagttgatgatgacaatggcagaggctagacttaaaggactttctaaggccgagtag
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integrated database retrieval system
