Moraxella nonliquefaciens: I6G26_07435
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Entry
I6G26_07435 CDS
T07003
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mnn
Moraxella nonliquefaciens
Pathway
mnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G26_07435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnn03400
]
I6G26_07435 (mfd)
Enzymes [BR:
mnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G26_07435 (mfd)
DNA repair and recombination proteins [BR:
mnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G26_07435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
ERCC3_RAD25_C
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPT43907
LinkDB
All DBs
Position
complement(1462688..1466281)
Genome browser
AA seq
1197 aa
AA seq
DB search
MININTPIIKPNFHTHFTTQKDASFALWLSVLSTQNKEHLTLVICPSQSSLQRLSDELDF
FGTSAHVFADYETLVYDSLSVHQDIISERIDLLTHMPTSGVLLVSVQTLMQKITPPSHLL
GRFFDLNVGDTFDVERERERLAKAGYKVVDNVYMAGEFAVRGSIVDIFAVGQPLPFRLEL
FDDEIETIKFFNPDSQRTISDEELNTLKKDGVFDDKNAPKSPKVSSFRLLPACEFDLDDK
ERFRQNFASLFPNVSARKVAFYHDIMNGIQPPGVEYYAPLFCDLHEWQTHGTLFDYLPKK
TLIVCDDNLSAYHHDFWEQIKARHHSLAFDKDVPILPPDYLYLPSNEFFQALKAYPRAVF
GDDREDALTLFDHISTHAVPNLPINHQKDEPLDEFLDFVRVCDEPILLVCESAGRREIIL
ELLKGKLDGNTVADFDEFLANLDEYKVTPNNATLPKPSKEADLDKIALTIAPMERGLWLK
SEKNQGICIISETQIFGRAVATNRHKRQNALSQALLIKSVSEMTEGSLVVHLSYGIGRYL
GLVVLDVGDGEQEFIHIKYADDANVYVPITNLALIGRYSGSDSEAVPLSKIGSGKWDKAR
QKSLTDIYDVAAELLNVQARRNAKQGISFDIDMASYELFASGFAYDETPDQQSAIEAVMF
DMKQTKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVALLVPTTLLAGQHEDSFKDRFA
DWAIKIESLSRFSSKKAQDKVLASLADGKVDIIIGTHRLLQDDVTFKNLGLMIIDEEHRF
GVRHKEKIKAMQAEVDTLTMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFVAQKS
EQTTKDAILREILRGGQVYYLHNDLTSIDTVAQNLSDLISEVRVGVAHGQMAHKELHDVM
SDFYHKKTNVLVASTIIETGIDVPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYCYL
FVPSIKGLSTDAKKRLDAISRANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQTIGFGL
YMDMLERATKAIKSGNTPSLATPLDLVSDINIHASALIPSDYLADVHERLLCYKRIANAE
TVDELNELRAEMIDRFGAMPTALSNLFLVHKMRVQSMPLGISKIDVTAFGLSMEFKADTP
VDGLAIVKLIQSNDGYRMNGATGLKYAFKDEKDVTGRVNAVFELLRYLHGHVAKESE
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgataaatatcaacactcccatcatcaagcccaattttcatacccattttactacccaa
aaggatgccagttttgccctgtggctgtctgttcttagcacccaaaataaagagcatctc
accttagtcatctgcccatcccaaagcagtttacaacgattaagtgatgaacttgatttt
tttggcacatctgctcatgtgtttgctgattatgagacattggtttatgacagcctgtcg
gtacatcaagacatcatctcagagcggattgacctattgacacacatgccaacaagcggt
gtattgttggtgagtgtgcagacactcatgcaaaaaataacgcccccaagtcatcttttg
ggacggttttttgatttaaatgtaggcgatacctttgatgtagagcgtgaacgtgaacgc
cttgccaaagcgggctacaaggtggtggataatgtctatatggcaggtgaatttgctgtg
cgtgggagcattgtggatatttttgcggtggggcagcccttaccgtttcgtttggaatta
tttgatgatgagatagagacgattaaatttttcaatcctgatagccaaagaaccatcagc
gatgaagagcttaacacgcttaaaaaagatggcgtatttgatgataaaaatgccccaaaa
tcacctaaggtgtcaagttttcgcctgttgcctgcttgtgaatttgacttagatgacaaa
gagagatttcgccaaaattttgccagtctatttccaaatgtatccgctcgcaaggtggca
ttttaccatgacatcatgaatggcatacaaccgcccggtgtggaatattatgcaccactg
ttttgtgatttacatgaatggcagacacatggcacgctgtttgattatttgcccaaaaaa
accctcatcgtctgtgatgacaacttatccgcttatcatcatgatttttgggaacagata
aaagcacgtcatcattctttggcatttgataaggatgtgccgatactgccacctgattat
ttgtatttgccaagcaatgaatttttccaagcattaaaggcatatccaagagcggtattt
ggtgatgacagagaagatgcactgactttatttgaccatattagcactcatgccgttcct
aatttgccaatcaatcatcaaaaagatgagccattggatgagtttttggattttgttagg
gtctgtgatgagccgattttattggtgtgtgagagtgcaggtcgccgtgagattatttta
gagttattaaagggcaaacttgatggtaacacggtggcggattttgatgagtttttggcg
aatttggatgaatataaagttaccccaaacaatgccactttacccaaaccttccaaagaa
gctgatttggataaaattgccctaaccattgccccaatggaacgtggtctttggctaaaa
agtgagaagaatcagggcatttgtatcatcagtgagacccaaatttttgggcgagccgtc
gctaccaatagacacaaacgccaaaacgccctatctcaggctcttttgataaaatcagtc
agtgagatgaccgaagggtcgcttgtggtgcatttgtcctatggtattggacgctatttg
gggcttgttgtgcttgatgtgggcgatggcgagcaggaatttatccacattaaatatgcc
gatgatgccaatgtctatgtaccaatcaccaaccttgctctaattgggcgttacagtggc
agtgacagtgaggcagtaccgttatcaaaaattggttcgggtaagtgggataaggcacgc
caaaagagcctgaccgacatttatgatgtggcagcagagctgttaaatgtgcaggctcgt
cgtaatgccaaacaaggcatcagttttgatattgatatggcaagctatgagctgtttgcc
agtggttttgcctatgatgaaacccccgaccaacaaagtgccatagaggcggtgatgttt
gacatgaagcagaccaagcccatggataggctaatttgtggtgatgtgggttttggcaag
acagaggtcgccatgcgtgcagcatttattgcggtgcaggcaggttatcaggtggcactg
cttgtgccaaccacactactggcagggcaacacgaggacagttttaaggacagatttgcc
gattgggcgattaagattgaaagtttgtctcgtttttcgtctaaaaaagcccaagataag
gtgcttgccagcttagccgatggcaaggtggatatcatcattggcacgcaccgactgtta
caagatgatgtaacatttaagaacttagggctgatgattattgatgaagaacaccgtttt
ggcgtgcgtcataaagaaaaaatcaaagccatgcaagcagaggtggacacgcttaccatg
accgcaaccccgattcctcgcacactaaatatggcattatctggcatgcaggacatttct
attattgccacaccaccagcaagacggcttgccattaagacctttgtggcccaaaaaagt
gaacagacaaccaaagatgccattttgcgtgagatattgcgtggggggcaggtgtattat
ttgcataatgacctgacaagcattgatacagtggcacaaaacttatccgacctcatctct
gaggtgcgtgtgggtgtggctcatggacaaatggcacacaaagaactacatgatgtcatg
agtgatttttatcacaaaaaaaccaatgtgcttgtcgccagtaccatcattgagacgggc
attgatgtgccaaatgccaatacgatcatcatcaaccgagcggataagtttggacttgcc
cagcttcatcagctgcgtggacgtgtggggcgatcgcatcatcaagcatattgttattta
tttgtgccatctatcaaaggtctaagcactgatgccaaaaaacgccttgatgccattagc
cgagccaatactttgggagcaggttttatgctggcaagtgaggatttggagattcgtggg
gcaggcgagattttgggtaagcagcagtctggcaacatgcagaccattggttttggactg
tatatggacatgttagaacgtgccacaaaggcgataaagtcgggcaatacaccaagcctt
gccacaccacttgatttggtcagcgacataaacattcatgcgtccgccttgataccgagc
gattatttggcagatgtgcatgagaggcttttgtgttacaagcgtattgccaatgccgag
acggtggatgagcttaatgagttgcgtgctgagatgattgaccgctttggagcaatgcca
accgcccttagtaatttatttttggtacacaaaatgcgtgtgcagagcatgccacttggt
attagcaaaattgatgttacagcttttgggctgagtatggaatttaaagcagatacacct
gtggatggtttggcaattgttaagctcattcagtctaatgatggctatcgcatgaatggg
gcaacagggttaaaatatgcttttaaagatgaaaaagacgtaacagggcgagttaatgcg
gtgtttgaattattaagatatttgcatgggcatgtggcaaaagaatcggagtaa
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integrated database retrieval system
