Methylobacterium nodulans: Mnod_1599
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Entry
Mnod_1599 CDS
T00839
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mno
Methylobacterium nodulans
Pathway
mno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mnod_1599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mno03400
]
Mnod_1599
Enzymes [BR:
mno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mnod_1599
DNA repair and recombination proteins [BR:
mno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mnod_1599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
AAA_30
UB2H
RecG_dom3_C
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACL56589
UniProt:
B8IPT9
LinkDB
All DBs
Position
1678240..1681515
Genome browser
AA seq
1091 aa
AA seq
DB search
MVKHRRRVAVGESAAEIIAPAIPSGALAVALIGLAETAAPLVFLARDGRRLDEIAAILRS
LAPARQVAVYPEWDCLPGDRTSPSRGTMGARAGVLRWLADTAHRPDLLLSTAPALIQRVP
PPEIWAEARVALRVGDGFEAASLTAALTRLGYILDERVDEPGEIAVRGRTLEVFPAAAPR
PCRIEHEDGRITAIRSYDPVTQRSVADAAELVIDPATELILGPDAPEPLAPFTGQEHRLP
RFYPRLATVLDALPGARLVVEAGAEARAAAFFEQVTEGSAAGEAHPADARLYLTPPEWSD
VLDRHRFASADAIGDVAVPAFVRERRPAAAFGRFLTERLRAGDRVLLTGPPGPLRRLARE
AVDQLGHKLLRARSWACVLAAEPGQVAVLEAPIGAGFRVPEAEVTVVAAADLLGLRAAPA
QGDAAAALPFGEIDLHRGDVAIHEDHGLCVFEGLEPVGGPDGEAEEAARLRFADDAVLLA
PLSQADRIWRYGSAAEAVSLDRLDGGTWEKRRATVAAAVAATARRMLDLAETRRRARAEP
LIPPDRQMERFCAGFGFSLTPDQAAAIDAVLEDLAAGRPMDRLVCGDVGFGKTEVALRAA
AAALFAGRQVALAAPTTVLVRQHTETFRRRFARFGIVPAQLSRLTPPAEAKRVKAGLAEG
SVRLVIGTHALAGRGVRMPDLGLVIIDEEQRFGTAQKERLRRAARGAHVLTLTATPIPRT
LQTALVGLQDLSVIATPPVVRQPIRTVIAPFAPDTVRAALMREHRRGGQSFVVCPRIADL
APMEAQLRSIVPELTIALAHGELPPDTMDEAMVRFAAGEGDVLLATNIIESGLDVPRANT
MLVWHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPQARLPAASEKRLRTLAALDRLGAG
FALSARDLDLRGAGDLFGEDQAGHVKLIGLDLYRDLLERAVRAARGEPDEAAPAEIRLGL
AGRIPQEYVPEPELRLSLCARLARLRTADEAEALRDEIEDRFGPLPPEVDTLLTLARLRA
ACRDLGIARLSAGPQGLAADFEPGRVEAVARAVDGVVRRGDRLILHRPCADPAECGRLAA
RFLRALEAAPA
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcacaggcgtcgcgtcgcggtcggtgagagcgccgcggagatcatcgcaccg
gccatcccctcgggggcgctcgcggtcgccctcatcgggctcgcggagacggccgcgccc
ctggtgttcctcgcccgcgacgggcggcggctcgacgagatcgccgcgatcctccgcagc
ctcgcgcccgcgcgccaagtggcggtctatccggaatgggactgcctgccgggcgaccgc
acctcgccgtcccgcggcaccatgggcgcgcgcgcaggcgtgctgcgctggctggcggac
acggcgcaccgtccggatctgctcctcagcacggcgccggccctgatccagcgggtgccg
ccgcccgagatctgggccgaggcccgcgtcgcgctgcgggtcggcgacggcttcgaggcc
gcttccctcaccgccgcgctcacccgcctcggctacatcctcgacgagcgcgtcgacgag
cccggcgagatcgcggtgcgcgggcgaaccctcgaggtcttcccggcggccgcgccgcgc
ccctgccgcatcgagcacgaggacgggcgcatcaccgcgatccgctcctacgatccggtg
acccagcgctcggtcgccgacgcggcggagctcgtcatcgatccggccaccgagctcatt
ctcggtccggatgcgcccgagccgctcgcgcccttcaccggccaggagcaccgcctgccc
cgcttctacccccgcctcgcgaccgtcctcgacgcgctgccgggggcgaggctggtggtc
gaggccggcgccgaggcgcgcgctgcggccttcttcgagcaggtcacggaggggagcgcg
gccggggaggcgcatccggcggatgcgcggctctacctcacgccgccggaatggtccgat
gtgctcgaccggcaccgtttcgcctcggccgatgcgatcggggacgtggcggtgccggcc
ttcgtccgggagcggcgcccggccgccgccttcggccggttcctcaccgagcgcctgagg
gcgggggaccgcgtcctgctgaccggcccgcccgggcccctgcgccggcttgcccgcgag
gccgtcgaccaactcgggcacaagctcctgcgggcgcgcagctgggcctgcgtgctggcg
gcggaacccggacaggtggcggtgctggaggcgccgatcggggccgggttccgggtgccg
gaggcagaggtcacggtggtggccgccgccgacctgctgggcttgcgggcggcgccggcg
cagggcgatgcggccgcggcgctgcccttcggcgagatcgacctgcaccggggcgacgtc
gccatccatgaggatcacggcctgtgcgtcttcgaggggctggagcccgtcggcggcccc
gacggcgaggccgaggaggcggcacgcctgcgcttcgccgacgatgccgtcctgctcgcg
cccctgagccaggccgaccggatctggcgctacgggtcggcggccgaggccgtctccctg
gaccggctcgatggcggcacctgggagaagcggcgggcgaccgtcgcggcggccgtcgcc
gcgacggcgcggcggatgctcgatctcgccgagacccgccgccgcgcccgggcggagccc
ctgatcccgcccgaccggcagatggagcgcttctgtgccggattcggcttttccctcacg
cccgatcaggcggccgcgatcgacgcggtgctggaggatctcgccgcgggccgtccgatg
gaccgcctcgtctgcggcgatgtcggcttcggcaagacggaggtggccctgcgggccgcg
gcggcggcgctgttcgcgggccggcaggttgccctcgcggcgccgaccacggtcctcgtt
cgccagcataccgagaccttccggcgccgcttcgcgcgcttcggcatcgtgccggcgcag
ctctcgcgcctgacgcctcccgcggaggccaagcgcgtgaaggcgggccttgccgagggc
agcgtgcggctcgtgatcggcacccacgcgctcgccggccgcggcgtgcggatgccggat
ctcgggctcgtgatcatcgacgaggagcagcgcttcggcaccgcccagaaggagcggctg
cgccgcgccgcccggggcgcgcatgtcctgaccctcaccgccaccccgatcccccgcacg
ctccagacggcgctggtgggcctgcaggacctgagcgtgatcgccacgcccccggtggtc
cgccagccgatccggaccgtcatcgcgcccttcgcacccgacacggtgcgggcggcgctg
atgcgcgagcaccgccgcggcggccagagcttcgtcgtctgcccgcgcatcgccgatctc
gcgccgatggaggcgcagctgcgcagcatcgtgccggagctgacgatcgcgctcgcgcat
ggcgagcttccccccgacacgatggacgaggcgatggtccgcttcgcggccggggagggc
gacgtgctgctcgccaccaacatcatcgagagcggcctcgacgtgccgcgcgccaacacg
atgctggtctggcatccggagcggttcggcctcgcgcagctgcatcagctgcgcgggcgc
gtgggccgcgggcagcggcgggcggcggcctacctgctcaccgatccgcaggcgcggctc
ccggcggcgagcgagaagcgcctgcgcaccctcgcggccctcgaccggctcggcgccggc
ttcgcgctgagcgcccgcgacctcgatctgcgcggcgcgggcgacctcttcggcgaggat
caggccgggcacgtcaagctgatcgggctcgacctctaccgcgatctcctggagcgggcg
gtgcgggccgcccgcggcgagcccgacgaggcggcgccggccgaaatcaggctcggcctc
gcggggcgcatcccgcaggaatacgtgcccgagccggaactgcgcctgagcctctgtgcg
cgtctcgcgcggctgcggactgccgacgaagccgaggccctgcgggacgagatcgaggat
cgcttcggcccgctgccgcccgaggtcgacactctgctgacgctggcccggctgcgcgcg
gcctgccgggacctcggcatcgcgcgcctcagcgccggaccgcagggccttgccgccgac
ttcgagcccggccgggtggaggccgtcgcgcgggcggtggatggcgtggtccggcgcggc
gaccgcctgattctgcaccgcccctgcgccgatccggccgaatgcgggcgcctggcggcc
cggttcctgcgggcgctggaggccgcgccggcgtga
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