Mustela nigripes (black-footed ferret): 131999258
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Entry
131999258 CDS
T09425
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04659
Th17 cell differentiation
mnp04710
Circadian rhythm
mnp05017
Spinocerebellar ataxia
mnp05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
131999258 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
131999258 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
131999258 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
131999258 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mnp03000
]
131999258 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
mnp03310
]
131999258 (RORA)
Transcription factors [BR:
mnp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
131999258 (RORA)
Nuclear receptors [BR:
mnp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
131999258 (RORA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
131999258
NCBI-ProteinID:
XP_059228040
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Position
13:complement(40444180..41153267)
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AA seq
523 aa
AA seq
DB search
MESAPAAPDPAASEPGSSGADAAAGARETPLNQESARKSEPPAPVRRQSYSSTSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYNISANGLTELHEDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS
LEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRAL
CGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggcgcg
gacgcggccgccggcgccagggagaccccgctgaaccaggaatccgcccgcaagagcgag
ccgcccgccccggtgcgcagacagagctattccagcaccagcagaggtatctcagtaaca
aagaagacacatacatctcaaattgaaattattccttgcaagatctgtggagacaaatca
tcaggaatccattatggtgtcattacatgtgaaggctgcaagggctttttcaggagaagt
cagcagagcaatgccacctactcctgtcctcgtcagaagaactgtttgattgatcgaacc
agtagaaaccgctgccaacactgtcgattacagaaatgccttgccgtagggatgtctcga
gatgctgtaaaatttggccggatgtcaaaaaagcaaagagacagcttgtacgcagaagta
caaaaacaccggatgcagcagcagcagcgagaccaccaacagcagcctggagaggccgag
ccgctgactcccacctacaacatctcggccaacgggctcaccgagcttcatgaggacctc
agcaactacatcgacgggcacaccccggagggaagcaaggcagactctgctgtcagcagc
ttctacctggacatacagccttccccagaccagtcaggtcttgatatcaatggaatcaaa
ccagaaccaatatgtgactacacaccagcatcaggcttctttccctactgttctttcacc
aacggagagacgtccccaactgtgtccatggcagaattagaacaccttgcacagaatata
tctaaatcacatctggaaacttgccaatacttgagagaagagctccagcagataacgtgg
cagacctttctgcaggaggagatcgagagctaccaaaacaagcagcgagaggtgatgtgg
cagttgtgtgccatcaaaatcacagaagctatacagtatgtggtggagtttgccaaacgc
attgacggatttatggaactgtgtcaaaatgatcaaattgtgcttctcaaagcaggttct
ctagaggtggtgtttatcagaatgtgccgtgccttcgactctcagaacaacaccgtgtac
tttgatgggaaatatgctagccccgatgtcttcaaatccttgggttgtgaagactttatt
agctttgtatttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaatt
gcgttattttctgcatttgtactaatgtcagcagatcgctcgtggctgcaggaaaaggta
aaaattgaaaaactgcaacagaaaattcagctagctcttcaacacgtcctgcagaagaat
caccgagaagatggaatactaacaaagttaatatgcaaggtgtctacattaagagcctta
tgtggacgacatacagaaaagctaatggcatttaaagcaatatacccagacattgtacga
cttcattttcctccattatacaaggagttgttcacttcagaatttgagccagcaatgcaa
attgatgggtaa
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