Mustela nigripes (black-footed ferret): 132002273
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Entry
132002273 CDS
T09425
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03015
mRNA surveillance pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132002273 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
132002273 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132002273 (PABPC4)
03041 Spliceosome [BR:
mnp03041
]
132002273 (PABPC4)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132002273 (PABPC4)
mRNA cycle factors
Stress granule specific factors
132002273 (PABPC4)
Spliceosome [BR:
mnp03041
]
Complex C
Other components
Complex C specific factors
132002273 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
132002273
NCBI-ProteinID:
XP_059233364
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All DBs
Position
14:complement(30131625..30147445)
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AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaagccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatgatcacccgtcgctccctgggttatgcctacgtcaacttccag
cagccggctgacgccgagcgggccttggatacaatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagccaaggagttcaccaatgtttatatcaaaaacttcggggaa
gaggtggatgatgagagtctgaaagagctgtttagccagttcggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcacagaagaaagtggaacggcaggctgagttaaagcggaaattt
gagcagctaaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgataccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagccgtcactgagatgaatggacgcatcgtgggctcc
aagccactatatgtcgctctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtacatgcagcgggtggctggaatgcgagcgctcccggccaacgccatcttaaatcag
ttccagcctgcagctggaggttactttgtgccagcggttccacaggctcagggaagacct
ccgtattatacacctaaccagttagcacagatgaggcctaatccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatccgccagtctgggcctcgtccc
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggc
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcctacagctgtgcag
accttagcacctcgtgctgccgtcgctgctgctgctccgcgggctgtcgcaccttacaaa
tacgcctccagcgtccgcagccctcaccccgccatccagcctctgcaggcaccgcagcct
gcggtccacgtgcagggccaggagcccctgaccgcctccatgctggccgcagctcccccc
caagagcaaaagcagatgctgggagaacgtttgttcccactcatccaaaccatgcattca
aacctggctgggaaaatcacgggcatgctgctggagattgacaactctgagctgctgcac
atgctggagtcccctgagtcgcttcgctccaaggtggatgaagccgtggcggttctacag
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctct
tag
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