Mustela nigripes (black-footed ferret): 132003701
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Entry
132003701 CDS
T09425
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
132003701 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132003701 (LIG3)
Enzymes [BR:
mnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132003701 (LIG3)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
132003701 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132003701
NCBI-ProteinID:
XP_059235373
LinkDB
All DBs
Position
16:complement(37406971..37428465)
Genome browser
AA seq
996 aa
AA seq
DB search
MTLTFKILFPSALRALGRKELSLFREQYHWPDRRQFSHWLETDLLDGPCLLQRRKPALSF
QEGHLRPRATCLVFLPGVHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKATGTPKKKAVVQAKLTATGQVTSPVKGASLVTNSNPRKFSGFSAKPDNSGAA
RASPPPKASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGF
HGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDEFLLRLSRLTREEEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMT
PVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKVA
HFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKAADLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPS
SQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFT
VAAGEEGSSTTGGSSGENQGTLGPAAAHKASRASPKQPSTSAKKAGGRPSSPNSRGGHQR
TVKVGQKRKAPDETACPAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMA
SATHVLGSRDKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgactttgactttcaagatcctcttcccatcagccctccgcgcactggggcgaaaagaa
ctgagcctgttccgagagcaatatcactggcctgacagaagacaattcagccattggtta
gaaacagatctgcttgatgggccctgcctcctgcagagaagaaagcctgctctgtcattc
caggaaggccatctaagaccacgtgccacctgccttgttttcttgccaggggtgcatgtg
ggactctgcagtggcccctgtgagatggccgagcaacggttctgtgtggactatgccaag
cgtggcacagccggctgcaaaaagtgcaaggaaaagattgtgaagggggtatgcaggatc
ggcaaagtggtgcccaatcccttctcagagtccgggggcgatatgaaagagtggtatcac
attaaatgcatgtttgagaaactggagcgggctcgggccaccacaaaaaaaattgaggac
ctcacagagctggaaggctgggaagagctggaagacaatgagaaggaacagataagccag
cacattgcagatctgtcttctaaggccacaggcacaccaaagaagaaagccgtcgtccag
gctaagctgacagccactggccaggtgacctctccagtgaaaggtgcctcactcgtcacc
aatagcaatccccggaaattttctggtttttcagccaagcccgacaactctggggcagcc
cgtgcaagccctccccctaaggcaagtctgtcctcaagcagatgtgaccccaagcacaag
gattgtctgctacgagagtttcggaagttgtgtgccatggtggctgagaatcctagctac
aacacgaagacccagatcatccaggactttcttcggaaaggttcagccggagatggtttc
cacggtgatgtgtacctaacagtgaagttgctgctgccgggtgttattaagagtgtttac
aacttgaacgataagcagattgtgaagcttttcagccgcatttttaactgcaacccagat
gatatggcacgagacctagagcagggcgacgtgtcagagacaatcagagtcttctttgag
cagagcaagtctttccccccagctgccaaaagcctccttaccatccaggaggtggacgag
ttcctccttcggctctccaggctcaccagggaggaggagcagcagcaggccctgcaggac
atcgcctccaggtgtacagccaatgacctcaagtgcatcatcagattgatcaaacatgat
ctgaaaatgaactcgggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaa
gccttcaaagcctcacgcaacctgcaggacgtggtggagagggtcctccgcaatgagcag
gaggtggagaaggagccaggccggagacgagctctgagcgtccaggcttccctgatgaca
ccagtgcagcccatgctggctgaggcctgcaagtccatcgagcacgcgatgaagaagtgt
cctaatggcatgttttctgagatcaagtacgatggggagcgagtgcaggtgcataagaac
ggggaccacttcaactacttcagccgcagcctcaagcctgtcctgcctcacaaggtggcc
cacttcaaggactacatccctcaggcttttcctggaggccacagcatgatcctggactcc
gaggtgctcttgatcgacacaaagacaggcaaaccgctgccctttgggactcttggagtg
cacaagaaagctgccttccaggatgctaatgtttgcctgtttgtttttgattgtatctac
ttcaatgatgtcagcctgatggacaggcctctgtgtgagcggcggaagtttcttcatgat
aacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcactaaagct
gcagacttggctgacatgatcaaccgggtcatccgagaggggctggaagggctggtgctg
aaggatgtgaagggtacatatgagcctggaaagcggcactggctgaaagtgaagaaagac
tatttgaacgagggggccatggctgacacagctgacctggtggtccttggggccttctat
gggcaagggagcaaaggtggcatgatgtccatctttctcatgggctgctatgacccaagc
agccagaagtggtgcacggtcaccaagtgtgcagggggccatgatgacgcaacccttgcc
cgcctgcagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccagc
tggctgaaaatcaacaagatctactatcctgactttatagtcccagacccaaagaaagct
gccgtgtgggagataacaggggctgagttctccaagtctgaggctcacactgccgacggg
atctccatccgattcccacgttgcacccgcatccgtgatgataaggactggaaatctgcc
actaacctcccccagctcaaggaactgtaccagctgtccaaggagagagcggactttacg
gtggcggctggagaggaggggagctccaccacagggggcagcagcggagagaaccagggt
accttggggcctgcggcggctcacaaggcctccagggcctccccgaagcagccctcaacc
agtgccaagaaggcaggaggaaggccgagtagccccaacagcagaggcggccaccagcgg
actgtgaaagtggggcagaagcggaaggctcctgatgagaccgcgtgcccagcaaaggtg
ctgctggacatcttcactggggtgcggctctacctgccaccctccacaccagacttcagc
cgtctcagacgctactttgtggcattcgatggggacctggtgcaggaatttgacatggcc
tcagccacacatgtgctgggtagcagggacaagaaccctgaggcccagcaggtctccccg
gagtggatttgggcctgtatccggaaacgaaggctggtggccccctgctag
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