Mustela nigripes (black-footed ferret): 132003894
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Entry
132003894 CDS
T09425
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132003894 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnp03041
]
132003894 (DHX8)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132003894 (DHX8)
Spliceosome [BR:
mnp03041
]
Complex C
Other components
Step II factors
132003894 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
TsaE
PhoH
Sigma54_activ_2
OB_RRP5_4th
ABC_tran
Cas3-like_C_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
132003894
NCBI-ProteinID:
XP_059235744
LinkDB
All DBs
Position
16:complement(18875463..18909621)
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AA seq
1222 aa
AA seq
DB search
MAVAVALAGAVTTTELGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKASLVKNGAEFTDSLISNLLRLIQTMRPPTKPSTSKDPVVKPKTGKEKLKELFP
VLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGPDKQRDAEHRDKTKKKKRSRSR
DRDRERDRDRERDRDRDRDHKRRHRSRSRSRSRTWERNKGKSRYRSRSRSQSPPKDRKDR
DKYGERNLDRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHIS
ELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRRNLVGET
NEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPD
FDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMM
QSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEW
KKHAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQI
TQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVI
KYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSA
TLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILV
FLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGK
CYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAM
EQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF
YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDI
RKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPS
SALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRL
EPLYNRYEEPNAWRISRAFRRR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctgtggccctggcgggagccgtaaccaccacagaactaggccccgcggaa
gaactcgccaaactcgagtatctgtctttagtgtccaaagtttgcaccgagctggacaat
cacctggggattaacgacaaggatctggctgaatttgtgatcagtctcgctgagaagaat
accacctttgatacttttaaggcttccctggtcaaaaatggcgctgaattcacggattct
cttattagtaacttgctgcgcctcatacaaaccatgcggcctccaacaaagccttctact
agcaaagatccagttgttaaacccaaaaccggaaaagaaaagctgaaggaactcttccca
gtcctttgccaaccagacaacccttctgtccggaccatgctggatgaggatgacgtgaaa
gtcgctgtggatgtgctgaaggaactagaggccttaatgcccagtgctgcgggcccggac
aagcagcgagatgccgagcaccgggacaagacgaagaagaagaagcggagccggagccgc
gaccgggaccgagaacgggaccgagatcgggagcgagacagagaccgtgatagagaccac
aaaaggagacaccggtcccgctcccggtcacgttccaggacctgggaaaggaataaaggg
aagtctaggtatcggtccaggagcagaagtcagagtccccccaaagataggaaggaccgg
gacaagtatggggagaggaatctggacagatggcgggataagcatgtggaccgtcctccc
ccagaagagcctgccatcggagacatttacaatggcaaagttaccagcatcatgcagttt
ggatgctttgtgcagctggagggattaaggaagcggtgggaaggcctggtgcacatctct
gagctccggcgagaaggccgtgtggccaatgtggcagatgtggtgagcaaaggccagagg
gtgaaggtcaaagtactgtccttcactgggaccaagaccagtctgagcatgaaggatgtg
gatcaagagactggagaagatctaaaccccaatcgacgacggaatcttgttggggagacc
aatgaggagacttcaatgaggaatccagacagaccaactcacctctccctcgtcagtgcc
cctgaagtagaggatgattcactggagcgcaaacgccttacccgcatctctgacccggag
aagtgggagatcaaacagatgattgctgccaatgtgctttccaaagaagagtttccggac
ttcgatgaagagactggcattcttcctaaagtggatgatgaagaagatgaagatcttgag
atcgaactggttgaggaagagcctccattcttgagagggcacaccaagcaaagcatggac
atgagccctattaaaatcgttaagaacccggatggttccctctcccaagcagcaatgatg
caaagtgccttagccaaagaaaggcgggaactcaagcaggcccagagggaagcggagatg
gattctattcccatggggctcaacaagcactgggttgatcctctgcctgatgcggaaggc
aggcagattgccgccaatatgaggggtattgggatgatgcccaatgacattcccgagtgg
aagaagcacgcctttgggggcaacaaagcttcttatgggaagaaaacccagatgtcaatc
attgagcagagagagagcttgcccatctacaaactgaaggagcagctggtccaggctgtc
catgacaatcaaatcctgatagttattggagagacaggatcagggaagacaacacagatc
acccagtacctggcggaggcaggctacacgtcccggggcaagattggatgtacccagccc
agaagagtagcggccatgtcagtggccaaaagagtgtcagaggagtttggttgttgcttg
ggccaagaggtgggctacaccattcgatttgaggactgcaccagcccagagacagtgatc
aagtacatgacagacgggatgttgctccgagagtgcctgattgaccctgacctcacacag
tacgcgatcatcatgttggacgaggcgcacgagagaaccattcacacggacgtgctcttc
gggttgttgaagaagacggttcagaaacggcaggacatgaagctgattgtcacctcagcc
acgctggatgcagtgaagttttctcagtacttctacgaagcgcccatcttcaccatccct
ggtcgaacatacccagtggagatactgtacacgaaggaaccggagacagattatctggac
gccagcttgatcaccgtcatgcaaatccacttaacagaaccaccaggtgatatcctggtc
ttcctgactggtcaggaggagatcgacaccgcatgcgagatcctctatgaaagaatgaag
tccctgggaccggatgttccagagctgatcatcctgccagtgtactctgctcttcccagt
gagatgcagacccgaatctttgacccggctccacctggcagcagaaaggtcgtgattgcc
accaacattgcagagacctcactgactattgacggcatctactacgtggtggaccctgga
tttgtgaagcagaaagtttacaattccaagaccggcatcgaccagctcgtggtcactccg
atttctcaggctcaggcaaagcagcgagctggcagagctgggagaacaggcccagggaaa
tgttacaggctgtacaccgaacgtgcctacagggatgaaatgctgaccaccaatgtgccg
gaaatccagaggaccaacttagcaagcacagtgctctcactcaaggccatgggcatcaat
gacctgctgtcctttgatttcatggatgcgcctccaatggaaaccttgatcacagccatg
gagcagctgtatacgctgggggccttggacgacgagggcctgctcactcgcctgggccgc
aggatggcagaattccctctggagccaatgctgtgcaaaatgctgatcatgtccgtgcat
ctgggctgcagtgaggagatgctgaccatcgtgtccatgctgtcggtgcagaacgtcttc
tacaggcccaaggataaacaagcccttgccgaccagaagaaagccaagttccaccagacc
gaaggggaccaccttaccctgctggctgtgtacaactcctggaagaacaacaagttctcc
aacccgtggtgctatgagaacttcatccaggctcgctctctgcgccgggcccaggatatt
cgcaagcagatgttaggcataatggacagacacaagctggatgtggtctcctgtggcaag
tccacggtgcgagtgcagaaggccatttgcagtggattcttccggaacgctgccaagaaa
gacccacaggagggctaccggacactgatcgaccagcaggtggtctacatccacccttcc
agcgctctcttcaacagacagcccgaatgggtggtgtaccacgagctggtgctgaccaca
aaggagtacatgcgtgaggtcaccactatcgaccccaggtggcttgtggagtttgctcca
gcctttttcaaggtctccgacccgaccaagctgagcaagcagaagaagcagcagcgtctt
gagcccttgtacaaccgctatgaggagcccaacgcgtggagaatatcccgggccttccgc
cggcgctga
DBGET
integrated database retrieval system
