Mustela nigripes (black-footed ferret): 132003969
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Entry
132003969 CDS
T09425
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp05016
Huntington disease
mnp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
132003969 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
132003969 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132003969 (HTT)
04131 Membrane trafficking [BR:
mnp04131
]
132003969 (HTT)
03029 Mitochondrial biogenesis [BR:
mnp03029
]
132003969 (HTT)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132003969 (HTT)
Membrane trafficking [BR:
mnp04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
132003969 (HTT)
Mitochondrial biogenesis [BR:
mnp03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
132003969 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
132003969
NCBI-ProteinID:
XP_059235932
LinkDB
All DBs
Position
1:204231360..204371346
Genome browser
AA seq
3141 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPPPPPPQLPQPPPQAQPPPPQPQPPPPPPPPPPP
GQAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNRVIKALMDSSLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFI
ANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVESEHSTLLILGVLL
TLRYLVPLLQPQVKDTSLKGSFGVTRKELEVSPSTEQLIQVYELTLHYTQHQDHNAVTGA
LELLQQLLRTPPPELLRALSAPGGGPLSTVRHQPGCRSRSGSIVEILAGGGSSCSPVLSR
KQKGKVLFGEAAALEDDSESRSEGSSPAFTASVKGEIGGELAASSGVSTPGSASSAADSV
GHDIITEQPRSQHTLQPDSVDLTSCDLASAATDGDEEDILSHSSSQISAVPSDPAMDLND
GTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYSGMQIGQPPDEDEEATGVLP
DEDADAFRSSSVALQQAHLLRSMGHSRQASDSSIDKFVSKDEAAEPGDQENKPCRIKGDI
GQSTDDDSVPLVHCVRLLSASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPESF
FSKLYKVPLDTMEHPEEQYVSDILNYIDHGDPQVRGATAVLCGTLISSILSRSRFQVGDW
MGTVRALTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVTSLCSSSHSELGLQLV
TDLLTLRDSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGTHHYTGLLKLQERVLHD
VVIYLLGDEDPRVRHVAAAALIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQ
PPSHFSVSTITRIYRGYNLLPTMTDVTVENNLSRVIAAVSRELVTSTTRALTFGCCEALC
LLSTAFPVCIWSLGWHCGVPPLSASDELRKSCTVGMATMILTLLSSAWFPLDLSAHQDAL
ILAGNLLAASAPKSLRSSWTSEEEVSPPTAKQEEVWPALGDRTLVPMVEQLFSHLLKVIN
ICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEPASVPLSPKKGSEASPAS
RQSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSA
LDVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFDG
LSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDPSGW
FDVLQKVSTQLKTNLTSTTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLD
LLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYH
SKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEV
VVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMLAKQQMHIDSHEA
LGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTED
IVLSRIQELSFSPYLICCPVINRLRDGDSTSTPEEHSEGRQIKSLPEETFSRFLLQLVGI
LLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAASRLFTVDSTDS
SFYGLERLNARVRAMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRRRSLSSTKSLS
PQMPGEEEDPGAACKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISL
SHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLT
LYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSAAQLPAEELSRIQEYLQSSGLAQ
RHQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGPLALETMVPDKDWYLRLVKSQCWT
RSDSALLEGAELVNRLPPSDMSTFMMNSEFNLSLLAPCLGLGMREVSGGQRSPLFEAARL
ATLDRVTSLVQQLPAAHHVFQPFLPVEATAYWNKLNDLFGDAMLYRSLTTLARALAQYLL
VFPKLPSHLHLPPEKERDTVKFVVMTLEALAWHLIHEQIPLSLDLQAGLDCCCLALQLPS
LWSTLSSPEMVTHACSLIHCVRFVLEAVVVQPGDQLLSPERRMNIPKASRENEIDSDTQK
QALEPRCLFSDPAYITAACAMVAEMVESLSSVLALGHKRNSNTPAFLTSVLRNIIISLAR
LPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINALGWTSR
TQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGN
PAVSCLEQQPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVP
SLSPATTGALISHDKLLLQINPERELGNMSYKLGQVSIHSVWLGNSITPLREEEWEEEEE
EEADVPAPASPPTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSGSARRTPIILISEVV
RSLLVVSDLFTERTQFEMMYSALTELRRVHPAEDEILTQYLVPATCKAAAVLGMDKAVAE
PVSRLLESTLRSSHLPSKVGALHGALYVLECDLLDETAKQLVPVISDYLLSNLKAVAHCV
NIHSQQHVLVMCATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCVLRG
LERLLLSEQLCRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKLSPGRSSDP
SPATPDSESVIVAMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEF
LSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFV
SASTSQWVSAVLPHVISRMGKLEQVDINLFCLVATDFYRHQIEEELDRRAFQSVFEVVAA
PGNPYHRLLTCLRNVHKVAAC
NT seq
9426 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggagaagctcatgaaggccttcgaatccctcaagtccttccagcagcaa
cagcagcagcagcagcagcctccgccgccgccgcctcagcttcctcagccgccgccgcag
gcgcagccgccgccgcctcagccgcagccgcccccacccccgccgcccccgccgcccccc
ggccaggcggtggccgaggagccactgcaccgaccaaagaaagaactctcagccaccaag
aaagaccgtgtgaaccattgtctgacaatatgtgaaaacatagtggcacagtcactcaga
aattctccagaatttcagaaacttctgggcatcgctatggaacttttcctgctgtgcagt
gatgatgcagagtcggatgtccggatggtggctgatgagtgcctcaacagagtcatcaaa
gccctgatggactccagtctgccgaggctgcagttagagctgtataaggaaatcaaaaag
aacggtgctccccggagccttcgcgctgccctgtggaggtttgctgagctggcacacctg
gtccggcctcagaagtgcaggccttacttggtaaaccttttgccttgcctgactcgaata
agcaagagacctgaggaatctgttcaggagaccttggctgcagctgtacccaaaattatg
gcttcttttggcaattttgcaaatgacaatgaaattaaggttctactaaaggctttcata
gcgaatctgaagtcaagctccccgaccattcggcgaacggcggctggctcagcagtgagc
atctgccagcactcgaggaggacccagtacttttacagctggctattgaatgtgctcttg
ggcttgctggtccccgttgagagtgaacactccaccctcctgattcttggggtgctgctt
acactcaggtacctggtgcccttgctgcagcctcaggtcaaagacacgagcctgaaaggc
agctttggggtgacgcggaaggaactggaagtctcaccctcaacagagcagctcatccag
gtctatgaactgaccttgcactacactcagcaccaagaccacaacgcagtgacaggagcg
ctggagctcctgcagcagctgttgcggacgcccccgcctgagctcctgcgggccctgagc
gctccaggcggtgggccactctccactgtgcgccaccagcctggctgccggagccgcagc
ggcagcatagtggagatcctggctggagggggttcttcatgcagccctgtcctttcaagg
aaacaaaaagggaaagtgctctttggagaagcagcagccttggaggatgactccgagtcc
agatcggagggcagcagccccgccttcacagcctcagtcaaaggtgagattggcggtgag
ctggctgcgtcttctggagtctccactcctggctctgccagttcagctgcggactctgtg
ggccatgacatcatcaccgagcagccccggtcacagcatacgctgcagccagactcggtg
gatctgaccagctgtgacctggcgagcgcagccaccgatggggacgaggaggatatcctg
agccacagctccagccagatcagtgccgtcccgtctgacccagccatggacctaaatgat
ggcacccaggcctcctccccagtcagcgacagctcccagaccaccactgagggacctgat
tcagctgtgaccccttcggacagttctgaaattgtgttagacggtgctgacagccagtat
tcggggatgcagatcggacagccaccggacgaggatgaggaagccacaggtgtccttcca
gatgaagatgcagatgctttccgaagctcttcagttgctcttcagcaagcacatttactg
agaagcatgggccacagcagacaggcctctgacagcagcatcgataaatttgtctccaaa
gatgaagctgctgaaccaggagatcaagaaaacaagccttgccggatcaaaggtgacata
gggcagtctaccgatgacgattctgttcctcttgtccattgtgtccgccttctgtctgct
tcatttttgctgactggggagaaaaatgtgttggttccggatagggacgtgagggtcagt
gtgaaggcactggcgctcagctgtgtgggagctgctgtggcccttcatcccgagtccttc
ttcagcaaactttataaagtgcctcttgacaccatggagcaccctgaggagcagtatgtg
tcagacatcctgaactacattgatcacggagacccccaggtcagaggagccacggctgtt
ctctgtgggaccctcatctcctccatcctcagcaggtcccgcttccaagtgggggactgg
atgggcaccgtcagagccttgacaggaaatacattttctctggtggactgcattcctttg
ctgcagaaaactttgaaggatgaatcttctgtgacttgcaagttggcttgtacagctgtg
aggcactgtgtcacgagtctttgcagcagcagccacagcgaactggggctgcaactggtc
accgacttgctgactctgagggacagctcctactggctggtgaggacagagcttctcgag
actcttgcagagattgactttaggttggtgagctttttggaggcaaaagcagaaaacctg
cacagagggacccatcattacacagggcttttaaaactgcaagaacgagtgctccatgat
gtggtcatctatctgctcggggacgaggaccccagggtgcggcatgttgcggcagcggcc
ttgataaggcttgtcccgaaactgttctataaatgcgaccaaggacaagccgaccccgtc
gtggctgtggcgagagatcaaagcagtgtttacctgaagctcctcatgcacgagactcag
cctccatctcacttctctgtcagcaccatcaccagaatatacagaggctataacttactg
ccaaccatgacagacgtcacagtggaaaacaacctctccagagtcattgcggccgtttcc
cgtgaactggtcacgtcgaccacgcgtgcactcacctttgggtgctgtgaagctctgtgt
ctcctttcaacagcctttcccgtctgcatttggagtttaggttggcattgtggggtgccc
ccactgagcgcctccgatgagttgagaaagagctgtactgttggcatggccacgatgatc
ctcaccttgctctcgtcagcgtggttcccactggatctctcagcccatcaggatgctttg
attttagctggaaacttgcttgcagccagtgcccccaaatctctgagaagttcatggacc
tccgaagaagaggtcagcccaccaactgccaagcaggaagaggtctggccagctctgggt
gaccggaccctggtgcccatggtggaacagcttttctcgcacctgctgaaggtgattaat
atctgtgctcacgtcttggacgacgtggctcccggaccagcaataaaggcagccttgcca
tctctgacaaaccctccatctttgagtcccatccgacggaagggaaaggagaaagaaccc
ggagagccagcctctgtgcccttgagccccaagaaaggcagtgaagccagtccagcctct
cgacaatctgatgccccagggcctgttacagcaaataagtcctcatcgttggggagtttc
tgtcaccttccttcatacctcaaattgcacgacgtcctgaaagctactcacgccaactac
aaggttaccttggatcttcagaacagcactgaaaagtttggaggctttctgcgctctgcc
ttggatgttctctctcagatcctggagctggcaacgctgcaggacattgggaagtgcgtt
gaagagatcctggggtatctgaaatcctgcttcagtcgggaaccagtgatggcaactgtt
tgcgttcagcagctgttgaagactctctttgggaccaacttggcctcccagtttgatggc
ttgtcatccaaccccagcaagtctcagggccgagcacaacgtctgggctcctccagtgtg
aggccgggcttgtaccactactgcttcatggctccatacacgcacttcacccaggcctta
gctgatgccagcctgaggaacatggtgcaggcggagcaggaccacgacccctcagggtgg
tttgatgtccttcagaaggtgtctacccagttgaagaccaacctcacaagcaccacaaag
aaccgcgcggataagaatgctattcataatcacatccgcttgtttgagcctctggttatt
aaggctctaaaacagtacacgaccaccacgtccgtgcagctgcagaggcaggtgctggac
ctgctggcgcagctggtgcagttacgggtcaattactgtctgctggactctgatcaggtg
tttattggattcgtgctgaagcagtttgaatacattgaagtgggccagttcagggaatca
gaggcaattattccaaacatctttttcttcctggtattactgtcttatgaacgctatcat
tcaaaacagatcattggaattcctaaaatcattcagctgtgtgatggcatcatggccagt
gggaggaaggctgtgacacatgccattccagctctgcagccaatagtgcatgacctcttt
gtactgagagggaccaacaaagccgacgctggaaaagagcttgaaacccaaaaagaggtg
gtggtgtccatgctgctgagactcgtccagcaccatcaggtgctggaaatgttcatcctg
gttttgcagcagtgccacaaggagaacgaagacaaatggaagcgactgtcccggcagatc
gccgacgtcatcctcccgatgttagccaagcagcagatgcacattgattctcatgaagcc
cttggagtgctaaatactttatttgagattctggccccttcctccctccgacctgtggac
atgctattacggagtatgtttgtcactccagatacaatggcatctgtaagcactgttcaa
ctgtggatctcaggaatcctagccattttgagggttctgatttcccagtcaactgaagat
attgttctctctcgtattcaggagctctccttctccccatatttaatctgctgtccagta
attaataggttaagagatggggacagtacttcaacaccggaagaacacagtgaaggaagg
caaatcaagagtttgccagaggaaacattttcaaggtttctactacaactagttggcatt
cttttggaggatattgttacaaagcagctcaaagtggaaatgagtgaacagcagcatact
ttctattgtcaagagctaggcacactgctaatgtgtctgattcacatcttcaagtctgga
atgttccgaagaatcacagccgctgcctccagactcttcacggtagatagcaccgacagc
agtttctacggcctggagaggctgaacgcgcgggtgcgcgccatggtgcccacgcacccg
gccctggtgctgctctggtgccagatcctgctgctggtcagccacaccgactaccgctgg
tgggcagaggtgcagcagacccccaggagacgcagtctgtccagtacgaagtcactcagc
ccccagatgcctggagaggaggaggaccccggtgcggcctgcaagcttgggatgtgcaat
agagagatagtgcgaaggggagctctcattctcttctgcgattatgtctgtcagaacctg
cacgattcagagcacctaacgtggctcatcgtgaatcatatccaggacctcatcagtctg
tcccacgagcctcccgtgcaggatttcattagtgctgttcaccggaactctgctgccagt
ggcctcttcatccaagcaattcagtcccgctgtgaaaatctttccaccccgaccaccctg
aagaagacacttcagtgcttggaagggatccacctcagccagtcaggtgctgtgctgacg
ttgtacgtggacaagctgttgtgcactccattccgtgtgctggctcgcatggttgacacg
ctggcttgtcgccgggtggaaatgcttctggctgcaaatttacagagcagtgcggctcag
ctgcccgcagaggagctgagcaggatccaggagtaccttcagagcagcgggctggcgcag
agacaccagaggctctactccctgctggacaggcttcgtctcgccaccgcacctggctca
cgcggcccttctcctccggtcacgtcccatccgctggacggggatgggcccctggcactg
gagaccatggttccagacaaagactggtacctgcgtctagtcaaatcccagtgctggact
aggtcagattctgcactgctggaaggggcagaactggtgaatcggcttcctcccagtgac
atgagcacattcatgatgaactcggaattcaacttaagcctgctggccccatgcctgggc
ctgggcatgcgcgaagtctctgggggccagaggagccccctttttgaagcagctcgccta
gcaactctggaccgtgtgaccagcctggttcagcagcttcctgctgcccatcatgtcttc
cagccattcctgcctgtggaggccactgcctactggaacaagttgaatgatctatttggg
gatgccatgttatatcggtccttgaccactctggcccgggccctggcccagtacctgctg
gtgttccccaaactgcccagccatttgcacctcccccctgagaaggagagggacactgtg
aagtttgtggtcatgaccctcgaggccctggcgtggcatctgatccatgagcagatcccg
ctgagtctggaccttcaggcgggcctggactgctgctgcctggccctgcagctccccagc
ctctggagcacactctcctccccggagatggtgacccatgcctgctctctcattcactgt
gtccgtttcgttctggaagccgttgtggtgcagcctggggaccagcttcttagtccagag
agaaggatgaacatcccgaaggcttccagagagaacgaaatagattcagacacacaaaaa
caggccttggaaccccggtgtttgttttcagacccggcgtacatcaccgcagcctgtgcg
atggtggcagagatggtggagtctttgtcatcggtgttagccttggggcacaaaaggaac
agcaacacccctgcgtttctcacatcagtgctcaggaacatcatcatcagcctggctcgc
ttacccctcgtcaacagctacacacgcgtgccccccttggtttggaagctcggatggtcg
cccaagccaggaggggactttggcacagccttccctgagatcccggtagagttcctccag
gagaaggaagtctttaaagagttcatctaccgcatcaatgcactaggctggaccagccgc
actcagttcgaggagacgtgggccaccctccttggtgtcctggtgactcagcccctggtg
atggagcaggaggagagcccaccagaagaagacacagagaggacccagatcaatgtcctg
gctgtgcaggccatcacatcgctggtgctgagtgcaatgactgtgcctgtggccggcaac
cctgctgtgagctgcttggagcagcagccccggaacaagcccctgaaagccctcgacacc
aggtttgggaggaagctgagtattatccgaggaattgtagagcaggaaatccaagcaatg
gtttcaaagagagagaacatcgccacccatcacttataccaggcgtgggaccccgtccct
tctctgtctccagctacgacaggtgccctcatcagccacgacaagctcctgctacagatc
aaccccgagcgggaactggggaacatgagctacaagcttggacaggtgtccattcactcc
gtgtggctggggaacagtatcacgcccctgagagaggaggagtgggaggaagaggaagag
gaggaagccgatgtccctgccccggcgtcaccacccacgtcacccgtcaactccaggaag
caccgggcgggggttgatatccactcctgctcccagtttctgctcgagttgtatagtcgc
tggatcctgccgtcaggttcagcccgaaggacgcccatcatcctgatcagtgaagtggtt
cgatctctcctggtggtgtcggacttgttcacggagcgcacccagtttgagatgatgtac
tcggcgctcacagagctgcggagggtgcaccctgccgaagacgagattctcacccaatac
ctggtgcctgccacctgcaaggcggctgctgtcctcgggatggacaaggctgtggcagag
ccagtcagccggctgctagagagcacgctgaggagcagccacctgcccagcaaggttggg
gccctgcacggtgctctctatgtgctggagtgcgaccttctggacgagacagcaaagcag
ctcgtaccagtcatcagcgactatctcctctccaacctcaaggcggtggcccactgcgtg
aacattcacagccagcagcatgtgctggtcatgtgcgccaccgccttctacctgatcgag
aactatcctctggacgtgggcccagagttctcagcctcaatcatacagatgtgtggggtg
atgctgtccggaagtgaggaatccaccccatccatcatctaccactgcgttctgcggggc
ctggagcgcctcctgctctcagaacaactctgccggctggatgcggagtccctggtcaag
ctgagtgtggacagagtgaatgtgcacagcccacaccgggccatggccgccctgggcctg
atgcttacctgcatgtacacaggaaaggagaaactcagtccgggcagaagctcagacccc
agccctgcgaccccagacagcgagtcagtgattgtggcaatggagcgcgtgtctgttctt
tttgacagggtcaggaaagggttcccctgtgaagccagagtggtggcacggatccttcct
cagtttttggatgacttcttcccaccccaggatgtcatgaacaaagtcattggagaattt
ctgtccaaccagcagccatacccacagttcatggccactgttgtgtacaaggttttccag
actctacacaccactgggcagtcatccatggtccgggactgggtcatgctgtccctctcc
aacttcacacagaggaccccagtggccatggctgtgtggagcctctcctgcttcttcgtc
agtgcttccactagccaatgggtctcggctgtccttccccacgtcatcagcaggatgggc
aagctggagcaagtggacattaacctcttctgcctggtggccacggacttttacagacac
cagatagaagaggagctggaccgccgggcctttcagtctgtgttcgaggtggtcgcagca
ccaggaaacccgtatcatcgactgctgacttgtttgcggaacgtccacaaggtcgctgcg
tgctga
DBGET
integrated database retrieval system
