Mustela nigripes (black-footed ferret): 132004260
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Entry
132004260 CDS
T09425
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132004260 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnp03041
]
132004260 (DDX42)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132004260 (DDX42)
Spliceosome [BR:
mnp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132004260 (DDX42)
Complex B
132004260 (DDX42)
Complex C
U2 SnRNP specific factors
132004260 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
132004260
NCBI-ProteinID:
XP_059236480
LinkDB
All DBs
Position
16:complement(14547461..14588137)
Genome browser
AA seq
940 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPESPIASATKGIPGFGNTGNLSSAPVTY
PSPGAQGVNSTASGNNSREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGDGGR
HGDGYRYPESSSSSGSSSRHADGHRHGENRHGGGGGRHGESRGANDGRNGESRKEACNRE
SKVDPKVDSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggaaccaaaaggggatttggctttggaggttttgct
attagcgctggaaagaaggaggaacccaaactcccacagcagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcgcctacccgccag
cagttccattccaagccagcagattctgacagcgatgatgatcccttggaggcgttcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaggaagaagataat
ctggaatatgacagtgatggaaatcccattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaacgag
catgaagaaataaccaacctcacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcgcctcctagaccgggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcttttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggagatggaccaatcgcagtgatcgtgtgtcctactagggagctctgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataatcttcgatcggttgccgta
tatggaggaggaagcatgtgggagcaggccaaggcccttcaggagggggcagagattgtt
gtgtgtaccccaggacgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactcttttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggagaggcaaatgaagatgtgacacagattgtggaaattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtagaatttacctcttcaggaagt
gttctcctgtttgttactaaaaaagccaatgctgaggagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgacgtggcacgagacattgat
actcatactcacaggattggccgcacaggacgagcaggtgagaaaggtgtggcctatacc
ttactgactcccaaggacagtaattttgctggtgacctcgtccggaacttagaaggagcc
aatcagcatgtttccaaggaactcctcgatctggcgatgcagaatgcctggtttcggaag
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggcggcctcggctac
agggagcggcctggcctaggctcagagaacacggaccgaggcaacaacaataacgtgatg
agcaattatgaggcctacaagccctccacgggagccatgggagatcggctgacggcaatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcgggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcccaacagggccataacagtccagaaagccccattgccagtgcc
accaagggtatcccaggctttggcaatactgggaacctcagcagcgctccagtgacctac
ccttctcctggagcacagggagtcaacagtacggcttcagggaataacagccgagaaggg
cctgggggaggcaatgggaagagagagagatacacggagaacaggggtggcagccgtcac
ggtcacggagagagtggcaatcggcatggtgacagtccacgtcatggagatggtggtcgc
catggagacggataccgctacccagaaagcagcagcagcagcggcagcagcagccgtcat
gctgacggtcaccgtcacggggagaacaggcatggaggaggtggcggtcgacacggagag
agccgaggcgcaaacgatggtcggaatggtgagagcaggaaagaggcttgtaaccgtgag
agtaaggtggaccccaaggtggacagcaagatggacaaggtggacagcaagacagataag
acagctgatggttttgctgtccccgagccacccaagcgcaagaaaagccgatgggacagt
tag
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integrated database retrieval system
