Mustela nigripes (black-footed ferret): 132006193
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Entry
132006193 CDS
T09425
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132006193 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132006193 (EDC4)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132006193 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
132006193 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
132006193
NCBI-ProteinID:
XP_059239942
LinkDB
All DBs
Position
17:42125932..42137758
Genome browser
AA seq
1439 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAETQRPSNAYNGDLNGLLVPDPLCSGDGT
SANKPGLRAMPPINLQEKQVICLTGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHT
AHEDFAFGESRPELGSEGLGSSTQGSQPDPRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSTSLQQIAVSPSSSSSSGSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPKLQ
LDGSLTMSSSSSLQASPRSLLPSLLPGPADKLTPKAPGQVPAAASALSLELQEVEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALHLLS
PRPRPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATASDSQVWPTAPDITRETCSS
LAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKVP
TPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSAVGSRLLEHQVADPPEDWPALIWQQQRE
LAELRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQERILTGHGSVWRRGGDSSSI
LGPGMDVGPAPGLFLSCSAERRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERS
IRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAA
ADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAR
EQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLHVAVGSLQESILAQVQRI
VKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHLDCQAQQAHILQLLQQGHLNQAFQ
QALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSYLEE
AVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKVARRLSLMLHGLVTPSLP
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatt
ctcaagctggaccggcccgcggggggtcccagtgcagagacccagcgcccatctaatgcc
tacaatggggatctcaacgggcttcttgtcccagaccccctctgctcaggtgatggtact
tcagcaaacaagcctggtctccgtgccatgccacctattaaccttcaggaaaagcaggtc
atctgcctcacaggagatgacagctctacatgcatcgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcaagcaaagcacggggcagcaacaaggtgaaa
atccagcctgtggccaagtatgactgggaacagaaatattactatggcaaccttattgct
gtgtccaactccttcttggcctatgccattcgggctgccaacaacggctcggcgatggtg
cgggtgatcagtgttagcacttcagagcggaccctgctcaagggcttcacaggcagcgtg
gctgatttggcctttgcacacctcaattcctcccagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggctctggttaatggcaaaattcaagaagagatcttggtc
cacatccagcagccagagggcacaccactgaaccacttccgcaggatcatctggtgcccc
ttcatcccagaggagagtgaggactgctgtgaggagggcagccccacggtggctctgttg
catgaggaccgggctgaggtgtgggatctggacatgctccgctccaaccacagcacctgg
cctgtgcgtgttagccagatcaagcaaggcttcatcgtggtaaaaggccacagcacttgc
ctgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacatcgaggggcaggatgagccaaggtgtctgcatgag
tggaagcctcatgatgggcggtccctttcctgcctcctgttctgtgacaaccacaagaag
caggaccctgaagtccctttctggaggttcctcatcactggtgctgaccagaatcgggag
ctaaagatgtggtgcacagtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgtctggacctctcagccgaa
taccttattctcagcgatgtgcaacggaaggtcttgtacgtgatggagctgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccaccccgtg
ctgagcttcggtatccaggttgtgagtcgctgccgactgcggcacactgaggtgctgcct
gctgaggaggagaacgacagcctaggggctgatgggacccacggagctggtgccatggag
tctgcagccggtgtgctcatcaaactcttctgtgtgcatactaaggcactgcaggacgtg
cagatccgtttccagccgcagttgaaccccgacgtggtggccccactccccacccacact
gcccatgaggactttgcatttggagagtctcggcctgaactgggctctgagggcctgggg
tcatctacccaaggatcccagcctgacccccgacgcatagtggagctgcctgcgcccgcg
gacttcctcagtctgagcagtgagacgaagcccaagctgatgacccctgacgccttcatg
acacctagcacctccctgcagcagatcgctgtgtcccccagcagcagcagcagctccggc
tctagctccagctccagctcctcctctcttacagctgtgtctgccatgagcagtacgtca
gctgtggacccctccttgcctaggccacctgaggagctgaccttgagccccaagttgcag
ctggacggcagtctgacgatgagcagcagtagcagcctgcaggcaagcccacgcagcctc
ttgcccagcctgctcccaggtccagctgacaaactgactcccaaagcacctgggcaggtg
cctgctgctgcctctgcactgtcgctggagctgcaggaagtggaacccctggggctaccc
caggcttctcccagccgcacccgctcccctgatgttatttcctcagcttccactgccttg
tcccaggacatccctgagatcgcatctgaggccctgtcccgtggttttgtctcctctgct
cctgagggtcttgaaccagacagtatggcctcagctgcctcagcgctccacctgctgtcc
ccacggccccggccggggcccgagcttggctcccagcttggcctcgatggaggacctggg
gatggggatcggcacagtaccccttcccttttggaggcagcgttgacccaggaggccaca
gcctctgacagtcaggtctggcctacggcaccggacattactcgtgagacctgcagcagc
ctggcagagagtcccaggaacggcctccaggagaagcacaagagcctggccttccaccga
ccaccttatcacctgctgcagcaacatgacagccaggacgccagtgctgagcaaagtgac
catgatgatgaggttgctagccttgcctctgctgcagggggctttggcaccaaagttccc
actccacggctaccggccaaggactggaagaccaagggttctcctcgagcctcacctaag
cttaagagaaagggcaagaaagatgacggggactcagctgtgggatcccggctcttggag
caccaggtggcagaccctcctgaggactggccagccctaatttggcaacagcagagagag
ttggcagagctgcgacacagccaagaagaattgctgcagcgtctttgcacccagctggaa
ggcctgcagagcactgtcacaggccacgtagaacgagccctggagtcgcggcatgagcag
gagcgtatccttacgggtcatggctcagtgtggcgtaggggtggggacagcagcagcatt
cttggcccaggaatggatgtgggacctgccccaggtctgttccttagctgcagtgcagag
cggcggctggagcgggcactggccgaggggcagcagcggggtggacagctgcaggagcag
ctgacacaacagctgtcccaggcgctgtcttcggctgtagctgggcggctggagcgcagc
atacgggatgagatcaagaagacggtgcccccgtgtgtctccaggagtctggagccagtg
gcaggccagctgagcaactcagtggccaccaagctcactgccgtggagggtagcatgaaa
gagaatatctccaagctgctgaagtccaagaacttgacagatgccattgcccgagcagct
gcagacacattacaggggccaatgcaggctgcctaccgtgaagcctttcagagtgtggtg
ctgccggcgtttgagaagagctgccaagccatgttccagcagatcaatgatagcttccga
ctgggcacacaagagtacttgcagcagctggagagccacatgaagagccggaaggcgcga
gaacaggaggcacgggagcctgtgttggcccagctgcggggcctggtcagcacactgcag
ggtgccaccgagcagatggcggccactgtgtctagcagcgttcgggctgaggtgcagcac
cagctgcacgtggctgtaggcagcctacaggagtccattttagcacaggtacagcgcatt
gttaagggtgaggtgagtgtagcactcaaggaacaacaggctgccgtcacatctagcatc
atgcaggccatgcgttcagctgctggcacacccgtccccgctgcccacctcgattgccag
gcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttccaa
caggccctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtggaccca
gggcaggtttttgggcagccaccctgcccactctcccagcctgtgctcctttccctcatc
cagcagctggcctctgaccttggtactcgaactgatctcaagctcagctacctggaagag
gctgtgatgcacctggaccacagtgaccccattactcgggaccacatgggctccgtcatg
gcccaggtgcgccagaagctcttccagttccttcaggctgagccacacaactcacttggt
aaagtggcccgacgtctcagcctcatgctgcacggccttgtaacccctagcctcccgtag
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integrated database retrieval system
