Mustela nigripes (black-footed ferret): 132010908
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Entry
132010908 CDS
T09425
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132010908 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132010908 (XAB2)
03041 Spliceosome [BR:
mnp03041
]
132010908 (XAB2)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132010908 (XAB2)
Spliceosome [BR:
mnp03041
]
Complex B
Other components
Prp19-related factors
132010908 (XAB2)
Complex C
132010908 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
132010908
NCBI-ProteinID:
XP_059244871
LinkDB
All DBs
Position
2:5729089..5741730
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AA seq
868 aa
AA seq
DB search
MVVMARLSRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEDDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKEDCPPPPAPTQPPPI
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggtccgagcggccggacctcgttttcgaagaagag
gacctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacatcgagttcaaacaaggtgccccgaagccgcggctcaaccagctgtatgagcgggcg
ctgaagctgctgccgtgcagctacaaactctggtaccgatacctgaaggcccgccgggca
caggtgaagcaccgctgtgtcactgaccctgcctacgaagacgtcaacaactgccacgag
cgggccttcgtgttcatgcacaagatgccccgtctgtggctggactactgccagttcctc
atggaccagggccgcgtcacgcacacgcgccgcacatttgaccgtgccctccgcgccctg
cccatcacccagcactcccggatctggcccctgtacctgcgcttcctgcgctcccacccg
ctgcccgagacggccgtgcggggctatcggcgcttcctcaagctcagccccgagagcgcg
gaggagtacatcgagtaccttaagtccagcgaccggctggatgaagccgcgcagcgcctg
gccaccgtggtcaacgatgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccggacaaggtacagtcgctcaacgtg
gacgccatcatccgtgggggcctcacccgcttcacggaccagctgggcaagctctggtgc
tccctggctgactactacatccgcagcggccactttgaaaaggcccgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgtgacttcacgcaggtgtttgacagctacgca
cagttcgaagagagcatgatcgcagccaagatggagacagcctcagaactggggcgggag
gaggacgatgacgtggacctggagctgcggctggcccgcttcgagcagctcatcagccgc
cggcccctgttgctcaacagcgtcttgctgcgccaaaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcatcagggccgcccccgggagatcatcaacacgtacacggag
gctgtgcagacggtggaccctttcaaggcaacgggcaagccccacacgctgtgggtcgca
tttgccaagttttacgaggacaacgggcagctggatgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcggaaggccacc
gcgctgcccgcccgccgtgctgagtacttcgacggctcggagcccgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgccgacctagaggagagcctgggtaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtcggacatctggagcacctac
ctgaccaagttcatcgcccgctatgggggccgcaagctggagcgcgcgcgggacctcttc
gaacaggcgctggacggctgccctcccaaatacgccaagacgctctacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgcgccacc
agggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgggcagcc
gagatctatggcgtcacccacacccgcggcatctaccagaaggccatcgaggtgctgtcg
gacgagcacgcccgggagatgtgcctgcgcttcgcggacatggagtgccggcttggcgag
atcgaccgggcgcgcgccatctacagcttctgctcccagatctgtgacccccggaccacc
ggggctttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggattcgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacaggcaccgtgtctgacctggcc
cctgggcagagcggcatggacgacatgaagctgctggagcagcgggcagagcagctggcg
gctgaggccgagcgggaccagcccccacgggcccagagcaagatcctgttcgtgaggagc
gacgcctcccgggaggagctggccgagctggcccagcaggccaaccccgaggagattgag
ctgggtgaggatgaggacgaggacgagatggacctggagcccaacgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaggaggactgccccccccccccg
gcccccacccagcctcccccaatatag
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