Mustela nigripes (black-footed ferret): 132011269
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Entry
132011269 CDS
T09425
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03082
ATP-dependent chromatin remodeling
mnp04714
Thermogenesis
mnp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132011269 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
132011269 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
132011269 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnp03021
]
132011269 (SMARCC1)
03036 Chromosome and associated proteins [BR:
mnp03036
]
132011269 (SMARCC1)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132011269 (SMARCC1)
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132011269 (SMARCC1)
PBAF complex
132011269 (SMARCC1)
GBAF(ncBAF) complex
132011269 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
132011269
NCBI-ProteinID:
XP_059245588
LinkDB
All DBs
Position
2:complement(17391879..17565816)
Genome browser
AA seq
1107 aa
AA seq
DB search
MAAAAGGGGLGAAAGAAGAGGAAAATGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSCRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPAESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTAGG
KEDEDPSKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEDK
METDTDGQQPEKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDLGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMIPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPMPGNILGPRVPLTAPNGMYAPPPPQ
PPPPPPPPPADGVPPPPAPGPPASAAP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggcgggctgggggctgcggcgggtgccgcgggcgctgga
ggcgcggcggcggccacgggcctggctgtttatcggcggaaggacggtggcccggccagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcggatgctcctaccaacaaaacgctggctgggctg
gtggtacagcttcttcagttccaggaagatgcctttgggaagcatgttacgaatccggcc
ttcaccaaactcccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcgtaggtttgatctacag
aatccatcccgaatggatcggaatgttgaaatgtttatgaacattgagaaaacattggtg
cagaacaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaacaaattgaaggatattatcaaacgacatcaggggacttttactgatgagaagtca
aaagcttcccaccacatttatccatatccttcctcacaagaggatgaagaatggttgaga
ccggtgatgagaaaagataagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgcggaaattgaagatccaccaattccagaa
aagccgtggaaggttcatgcgaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaaccggaagcccgtgagctgtcgtcagcgaatt
tctaccaagaatgaagagccagtcagaagtccagagaggagagataggaaagcatcagct
aatgctcgaaagaggaaacattcgccttcccctccgcctcctacacccgcagaatcccgg
aagaagagtggaaagaagggccaagctagtctttatgggaagcgcagaagtcagaaagag
gaagatgaacaagaagatcttaccaaggacatggaagacccaacaccggtacccaacata
gaggaagtggtgcttccaaaaaatgtgaacccaaagaaagacagtgaaaacacacctgtt
aaaggaggaactgtcgcagatctagatgaacaggatgaagaaacagtcacagcaggagga
aaggaagatgaagatcctagcaaaggtgatcagagtcgctcacttgaccctggagaagat
aatgtaaccgagcagaccaatcacattattattcctagctatgcgtcatggtttgattat
aactgtattcacgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaacaaa
tccaagacaccagaaatatacttggcatatcgaaattttatgattgacacatatcgccta
aacccccaagaatatttaaccagcactgcttgtcggaggaacttgactggagacgtgtgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggctatgggacctcctcctactcctcattttaatgtgttagct
gataccccctctgggcttgtgcctctacatcttcgatcacctcaggtccctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacatttactctaagaaaaccttagcaaagagtaaaggtgccagtgctgga
agggaatggactgaacaagagacccttctgctcctggaggccctggagatgtacaaggat
gattggaacaaagtgtcagagcacgttggaagtcgtactcaggatgaatgcatcctccac
tttctgaggcttcctattgaggacccttaccttgagaattcggatgcttccctggggccc
ctggcttaccagcctgtccctttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggaccctcgtgtggcatctgctgcagcaaaagcagctttggag
gagttttctcgggtccgagaggaggtaccactagaattggtcgaagctcatgtcaagaaa
gtacaagaagcggcacgagcctctgggaaagtggatcccacctatggcctggagagcagc
tgcattgcaggcacgggacctgacgagccagagaagcttgaaggggctgaagaggacaaa
atggaaacagatactgatggtcagcagcctgaaaaggcagaaaacaaaggagaaaatgaa
acagatgaaggtgacaaagcacaagatggagaaaatgaaaaaaacagtgagaaggagcag
gacagtgaagttagtgaggataccaaatcagaagaaaaggaaactgaagagaacaaggaa
ctcactgatacttgtaaagaaagagaaagtgatctcgggaagaagaaagtagaacatgaa
atttccgaaggaaatgtggccacggccgcagcagctgctctcgcctcagctgcaaccaaa
gccaagcacctggctgccgtggaggagagaaagatcaagtctctggtggccctgctggtt
gagacacagatgaagaagttggagatcaaacttcgacattttgaggagctggaaactatc
atggacagagagaaggaggctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggagcagctgaaatatgccgaactgcgagcccgacagcaaatggaacag
cagcagcacgggcagaaccctcagcaggcacaccagcactcaggagggcctggcctggcg
ccgctcggagcagcggggcaccccggcatgatgcctcatcagcagccccctccctacccc
ctgatgcaccaccagatgccgccacctcacccaccccagccaggtcagataccaggtcca
ggatccatgatccctgggcagcccatgccaggccgtatgatccccaccgttgcagccaac
atccacccccctgggagtggcccagcacctcctggtatgcctccaatgccaggaaacatc
ttaggaccccgggtacccctcacggcacctaatggcatgtatgccccaccgccgccgcag
ccgccaccaccaccgccaccaccgcccgcagacggagtccctccgcctcctgctccaggc
ccgccagcctccgccgccccctag
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integrated database retrieval system
