Mustela nigripes (black-footed ferret): 132011800
Help
Entry
132011800 CDS
T09425
Symbol
TOPBP1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132011800 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnp03032
]
132011800 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132011800 (TOPBP1)
DNA replication proteins [BR:
mnp03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
132011800 (TOPBP1)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
132011800 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
132011800
NCBI-ProteinID:
XP_059246924
LinkDB
All DBs
Position
2:complement(90526386..90590151)
Genome browser
AA seq
1512 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSDNSECFFKALESIKEFQSEEYLQIITEEEALEIKENDRSLYIC
DPFSGIVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTVSCTSLEKDK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKITRYTDVNMEDFKCPIFLGCIICVTGLCSLDRKAVQQLTIKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSVDKGFCQDESIYKTEPRPETKTVPDTSTPT
GQINTVDSRTLSDVSHISNINASCINESICNSVLNSKVEPTLENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFSKGYMLPEEPYIHANYQPVEIPVSDQPESKTALLKRNNSLSKKNLAPD
EKHEQADEDLLSQYINNNPTVVEAVKSEVEPFNDSTHISLPEENQSSVTCCLPDTSTITE
EGLFSQKSFLVLGFSNENESNIANIIRENAGKIVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNTWLVTCIDYQTLIDPKSNPLFMPVPVMAGMTPLEDCVISFSQCAGAEKDSLTFLAN
RLGASVQEFFVRKSNAKKGMFASTHLVLKEPGGSKYEAAKKWNLPAVTISWLLETARMGK
RADESHFLIEKSAKEEQSVETETTNRVNLNPGTPEHPVAHLETHRKTAVTPLDMNRFQSK
AFHAVISQHTRQVSASPPVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPSQQKRKLSTPLSEVIVRNLKLALANSSRNAVALSASPQLKDAQSKKEEAPKPLHKVV
VCVSKKLSKKQGELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVHIV
SEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGRLSNSRLLSVDSATKDDEPDHL
PVEENNIDSVATSNKELATSNGDGRSDSKGALTQTLEMRENFQKQLQEIMSATSIVKPQG
QRASLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQIIWDDPT
AREERARLASSLQWPSCPTQYSELQVDIKKLEDSPSQEALRDSEIAKQAVCDPGSVCVTE
APKPPISEELETPVKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITEETHEDLKKQYIF
QLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKYLASVAAGKWVLH
RSYLEACRTAGHFVLEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKLQQRQESGIV
EGAFSGWKVILYVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDFNKLKPDDSG
VNIAEAAAQNVYCLKTEYIADYLMQESPPRVENYCLPEAVSFLPNNKEPGPGLSQKRKAP
TEKNKIKRPRVN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagaaccgtttcttgtgaagtttttaaagtcttcagataattcc
gaatgtttttttaaagcacttgagtcaataaaagagttccaatcagaagaatatcttcag
atcattacagaagaagaggcattggagataaaggaaaatgacaggtcactttatatctgt
gacccttttagtggcattgtctttgatcacctcaaaaagcttggctgcagaattgttggc
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagctgaacatcca
gtttataatatggttatgtctgatgtaactgtgtcttgtacaagcctggaaaaagataaa
agggaagaagttcataaatatgtacaaatgatgggtggacgtgtatacagagaccttaat
atatcagtaactcaccttattgcaggagaagttggcagcaaaaaatatttagttgctgca
aacctaaagaaacctattttgcttccttcttggattaaaaccctttgggaaaagtcacaa
gagaaaaaaataactaggtatactgatgtaaacatggaagacttcaagtgtcccattttt
cttggttgcattatctgtgtgactggcttgtgtagtttagacagaaaggcagttcagcaa
ctcacaattaagcatggaggtcaatacatgggacaactgaaaatgaatgaatgcacacac
ctcattgtgcaagaaccaaaaggtcaaaagtacgaatgtgccaagagatggaatgtacac
tgtgtgaccacgcagtggttttttgacagtgttgacaaaggtttttgtcaggatgaatcc
atatacaaaacagagccaagaccagaaacaaagactgtgcctgatacttcaactcctact
ggccagatcaacacagttgatagtcgtactctttcagatgtcagccatatttccaacatc
aatgcaagttgtataaatgaatcgatatgtaattcagttcttaatagcaaagtggagcct
acacttgaaaatctggaaaatctggatgtcagtgcatttcaagcacctgaagatttatta
gatggttgtcggatctatctttgtggttttagtggcagaaagcttgataaactgagaagg
cttattaacagtggaggtggagttcgttttaatcagctcaatgaagatgtaactcatgtt
atcgtgggagattatgatgatgaattgaagcagttttgggataagtcagcccacaggcct
catgtagtaggagcaaaatggttgctagagtgttttagtaaaggttacatgcttcctgaa
gagccatatatccatgctaactaccagccagtggaaattccagtttcagatcagcctgag
agtaaaacagcccttttaaaaaggaacaacagcttgtctaagaaaaacttggctcctgat
gaaaagcacgaacaagctgatgaagatctgctctctcagtacataaataataacccaaca
gtagttgaagctgtgaagtctgaagttgagccctttaatgactctactcatatttctctg
ccagaagaaaaccagtcttctgtcacttgttgcctccctgacacttctacaattaccgaa
gaaggtttatttagccaaaagagtttccttgttttgggctttagtaatgaaaatgaatct
aatattgcaaatatcataagagaaaatgctggaaaaatcgtgtcccttcagagcagaatt
gttgctgattatgctgtggttcctctgctggggtgtgaagtagaagcaactgtgggagaa
gttgtcacaaatacgtggctggtaacctgtatagactatcaaactttaattgatccaaag
tcaaatcctctcttcatgccagtcccagtgatggcaggaatgactcctttagaggattgt
gttatttcattcagccagtgtgcaggagcagaaaaagattcgttgacattcttggcaaat
cgccttggagcaagcgttcaagaattctttgttcgcaaatccaatgcaaagaaaggcatg
tttgccagtacacatcttgtattgaaagaaccaggtggttctaagtatgaagctgccaag
aagtggaatttaccagcagtcaccatatcttggctgttggagactgctagaatgggaaag
agagcagatgaaagccattttctgattgaaaagtctgctaaagaagaacaaagtgtggaa
actgaaacaacaaacagggtgaatctaaacccaggtactccagagcatcctgttgcacac
ctggaaactcataggaaaacagccgtcacgcctttagatatgaaccgctttcagagtaaa
gctttccatgctgtgatctcacaacataccagacaggtttcggcctccccaccagtggga
caaccacttcagaaagagccctccttacatctggatacaccatcaaaatttctgtccaag
gacaaactcttcaagccttcctttgatgtgaaggatgcacttgcagccttggaaactcca
ggaggtcctagccagcagaaaaggaaactgagtacgccactttcagaagtcattgtcaga
aacttgaaacttgctttggcaaatagctctcgaaatgctgttgctttgtctgccagccct
cagctgaaggatgcccaatcgaagaaggaagaagcccccaaaccacttcacaaggtagtg
gtatgtgtgagtaagaaactcagtaagaaacagggtgaactgaatgggattgcagcctct
ctaggagcagattacagatggagttttgatgaaacagtgactcatttcatttatcaaggc
cgaccaaatgacactaaccgagagtataaatctgtaaaagaaagaggagtacacattgtt
tcagagcactggcttttagaatgtgcgcaagagtataaacaccttcctgaatctctttat
ccacatacttacaatcccaaaatgagcttggatatcagtacagtgcaagatggcagactc
tctaatagtcgactactctcagtggattcagcaacaaaggatgatgagccagatcatttg
cctgtagaagaaaacaatatagacagtgtggccaccagtaacaaagaattagcaacatca
aatggcgatggaaggagtgactctaaaggagctctgacacagaccttggagatgagagag
aactttcaaaagcagctgcaggagataatgtctgctacatcaatagtgaaaccccaaggg
cagagggcttctctttcaagaagtggttgtaacagtgcttcttcaacccctgatagcact
cgatctgcccgcagtgggcgaagtagagtcctggaagcactgaggcagtcacgtcaaaca
gtacctgatgtcaacacagagccctcccagaatgagcagatcatttgggatgacccaaca
gccagggaggagagagcaagacttgccagcagtctgcagtggcctagttgtcccacacag
tattcagagcttcaggttgacattaaaaaattggaggactctccttcccaggaggcttta
cgtgactcagaaattgctaaacaggctgtctgtgatcccggaagcgtgtgtgtgactgaa
gctccaaaacccccaatctctgaagaactggaaacaccggtaaaagacagccacctaatc
cctacacctcaagcgcccagtattgccttccccctcgccaacccaccagtggctccacat
cctagagagaagattataacagaggaaacacatgaagatttaaaaaaacagtatatattt
cagttgtcatctctgaatcctcaagaacgtattgattattgtcatctgattgaaaaacta
ggtggattagtaatagagaaacagtgctttgatcccaattgtacacacattgttgtggga
catccacttcgaaatgagaagtatttggcctcagtggcagctgggaaatgggtgcttcat
cgctcctatctggaagcatgccggactgctggacacttcgtactggaagaagactatgaa
tggggaagtagttccatacttgatgttttgactggaatcaacgttcaacaacgaagacta
gcacttgcagcaatgagatggaggaagaaactccagcaaagacaagaatcgggcattgtt
gagggggcatttagtgggtggaaggttatcttatatgttgaccaatcccgagaagcagga
ttcaaacgccttcttcagtcaggaggagcaaaggtactgcctggtcattctgtaccttta
tttaaagaagccacacatctcttttctgacttcaataaactgaaaccagatgactcaggg
gttaatatagcagaagctgcggcccaaaatgtgtactgcttgaaaacagagtacattgct
gattatttgatgcaggaatcccctcctcgagtagaaaattactgtctcccagaagcagtt
tcatttcttccaaataataaggaacctgggcctggattatcacagaagaggaaagctcct
acagagaaaaataaaatcaaacgacctagagtaaactaa
DBGET
integrated database retrieval system
