Mustela nigripes (black-footed ferret): 132012479
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Entry
132012479 CDS
T09425
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
132012479 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mnp04147
]
132012479 (COL18A1)
00535 Proteoglycans [BR:
mnp00535
]
132012479 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mnp00536
]
132012479 (COL18A1)
Exosome [BR:
mnp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132012479 (COL18A1)
Proteoglycans [BR:
mnp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132012479 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mnp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132012479 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
132012479
NCBI-ProteinID:
XP_059248498
LinkDB
All DBs
Position
2:218400722..218480905
Genome browser
AA seq
1727 aa
AA seq
DB search
MAPHPCGRPGRLLLLLLPPLLLTCRPAAAQANLLSLNWLWSTRTEGPPAELVSAPPRSPH
VQPGEDTTTHSAPQHGPSEQGTAPASPALPVERLETGQGRASTTPAASTAGPDTKEENLA
GVGAKILRVAQGIRSFVQLWDDTTTPAGSPATETPAPVTPTAPLTLAGPSSAPQENGTAL
WLGSMAPSSPDTPRMEAGTPPGPTQLPPSPGGPSLLPPSPGRASLSSALGGAPSWGSPSS
PGRPRDPDSGGLLPVAARPSQRHRPPDIHKRSPRLLALVAGPPGALTAPAALSSDPPTLA
AWIPLLTMDRGAWAPHGAGSVGPGLAGVSALLGAAPWTPTGQSVPGAAGRCLPLPPSLPV
CGRLGIGRSWLPNHLHHGSSEEVQAAARAWGGLLQTRCHRFLAWFFCLLLAPPCAAGPLP
APPPCRQFCEALEDACWSHLDGGRLPVPCASLPAREDGYCVFIGPGAETLGAEVGLLQLL
GEPPPQQVTQVDDPDVGPAFVFGPDANSGQAARYHFPGRFFRDFSLHFHIRPATEDAGVL
FAITDAAQAVVSVGVKLSGVRDGHQQIQLLYTEPGAARTHTAASFRLPAFTGQWTRFALS
VDGATAALFVDCELFQRVPLARSPRGLELEPGAGLFVAQAGGADPDKFQGAIAELRVRED
PHVSSLHCLEEDDEDSGGASGDFGSGQEETREPLREPSGPSSNPSLPEAPPVTSPPLAAG
GNEEGSRTEEMEEETTVPALAARTLPTLDLVTAGSVWSLGGGLEEGPAARSPEPVPGPQC
PPGPPGPPGKDGIPGRDGEPGDPGEDGTPGDPGPQGFPGTPGDAGPKGEKGDPGVGPRGP
PGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGYPGPPGPPGVPGLPGEPGR
FGMNSSDVPGPAGLPGVPGRNGPPGLPGTPGPPGPPGRDGGPGKTGQKGSPGDAGAPGPK
GDKGDPGPAGTPGENGLAGAPGPAGPPGPPGPPGPPGPGLAAGLDDMEGSGAPFWSTAQG
ASGPQGPAGPPGVKGDPGLTGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGEKGTQG
EKGEPGRDGVGQPGLPGPPGPPGPVVYLSEQDRVLAGVPGPEGRPGFAGFPGPAGPKGDV
GSKGQQGLPGPKGEKGEPGPVFSHDGSMLAPGQKGAKGEPGFRGPPGPYGRPGHKGEIGF
PGRPGRPGMNGLKGEKGEPGHASVGFGVRGPPGPPGPPGPPGPPGVPIYDSNAFTESGRP
GAPGLPGLQGPSGPKGDKGDVGPPGPPGQFPLDLLPLEAEMKGEKGDRGDPGPKGERGEP
GGGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPP
GPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPEVPEGW
LIFVAEREELYVRVRGGLRKVLLEARTPLPRGTDNEVAALQPPAGNPYPRRELTHSTVRP
WRADDILASPPRLPDPQPYPGAPHHGSYRHFQPARPTGGPTHSHTHQDYQPVLHLVALNS
PQPGGLRGIRGADFQCFQQARAAGLPGTFRAFLSSRLQDLYSVVRRADRTGVPIVNLRDE
ELFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCEA
WRTEAAGAAGQASSLLAGRLLEQKAASCQQAFIVLCIENSFMTSSSK
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcacccctgcggccgcccgggccggctgctgctgctgctgctgccgccgctg
ctgctcacctgccgccccgccgccgcccaggctaacctcctgagcctgaactggctgtgg
tccactaggacagaagggcccccggccgaactggtctccgcgcccccgcggagcccccat
gtgcagcccggggaggacaccaccacgcactcggccccccagcatggcccctcggagcag
gggacagcccctgccagccccgcactccccgtggagaggctggagaccggccagggcagg
gcctccaccacacccgctgcctccaccgcgggcccggacacgaaggaggagaacctcgcc
ggcgtgggggccaagatcctgcgcgtggctcagggcatccggagctttgtccagctgtgg
gatgacaccacgacccccgcgggctcccctgcgacagagacgccagcccctgtgaccccc
acagcccccctcacgctggccgggccctccagcgccccccaagagaacggcacggctctt
tggctgggcagcatggccccgagctccccggacaccccgaggatggaggccggcaccccg
ccggggcccacccagctgcctccctccccgggcgggccctcgctgctgccaccttctcca
ggtagagcttctctgtcctccgcgctgggtggggccccttcctgggggagcccgtcgtcc
ccggggcggccccgggatccggacagtggaggactcctgcccgtggcagcccgtcccagc
cagcggcaccgaccccccgacatccacaagcgctcgccacgtctgcttgccctggtggcg
ggtcccccgggtgccctcactgctcctgcggctctctcctctgacccccccacgctggcg
gcttggatcccactcttaaccatggacaggggtgcttgggctcctcacggggctggctct
gtggggccgggtcttgctggtgtctctgcgctgctgggggcggccccttggacccccacc
gggcagtccgtgcccggggccgctggccgctgcctgccgctgcctccctccctgcccgtc
tgcggccgcctgggcatcggacgctcgtggctgcccaaccacctgcaccacgggagcagc
gaggaggtgcaggccgccgcccgggcctgggggggcctcctccagacgcgctgccaccgt
ttcctcgcctggttcttctgcctgctgctggccccgccctgtgccgccggcccgctgccc
gcgcccccgccctgccgccagttctgcgaggccctggaggacgcgtgctggagccacctg
gatgggggccggctgccggtcccctgcgcctcgctcccggcccgggaggacggctactgc
gtgttcatcgggccgggtgcagaaactctgggcgcggaggtggggctcctgcagctgctc
ggagagcccccgccccagcaggtgacccaggtggacgaccccgacgtggggccggccttc
gtcttcggcccggacgccaacagcggccaggccgcccgctaccacttccccggccggttc
ttccgcgacttctcgctgcacttccacatccggcccgccacggaggacgcgggtgtgctg
ttcgccatcacggacgcggcgcaggcggtggtctccgtgggcgtgaagctgtcgggcgtg
cgtgacgggcaccagcagatccagctgctgtacacggagccgggggccgcgcggacccac
acggccgccagcttccgcctgccggccttcaccggccagtggacgcgctttgccctcagt
gtggacggcgcgaccgcggcgctgttcgtggactgcgagttgttccagcgggtgccgctg
gcgcgctccccgcggggcctggagctggagcccggcgcaggcctcttcgtggcccaggcc
ggaggagcggaccctgataagttccagggggcgatcgcggagctgagggtgcgcgaggac
ccccacgtgagctccctgcactgtctggaggaggacgacgaggacagcggcggggcgtcc
ggagacttcgggagcgggcaggaggagacccgggagcccctcagggagccgtcgggtccg
tcgtccaaccccagccttcctgaggctcccccggtcacttctccaccgttggctgcgggc
gggaatgaggaaggttccagaacggaagaaatggaggaagaaaccacggtgcctgcgttg
gcagctcggaccctccccaccttggatctggtcaccgcagggagcgtttggagcctcggg
ggcggcctggaagagggtcctgccgcgcggagccctgagcctgttcccgggccgcagtgc
cctcctggccccccagggccaccagggaaggatggcatccctggaagagacggcgagcca
ggggatcccggtgaagacgggacaccgggcgaccctgggccacagggcttccccgggacc
ccgggagacgcgggccccaagggcgagaagggggaccctggggtcgggccgagaggacct
ccaggaccccaagggcctccagggccaccaggaccctccttcaggcatgacaagctgacc
ttcatcgacatggagggctccgggttcggcggagacctggagagcctccggggccccaga
ggctaccccggccccccagggcccccaggcgtcccaggcctgcccggagagccaggccgc
ttcgggatgaacagctcagacgtgccaggacccgccggcctccctggtgtgcccgggcgg
aacgggccccctgggcttcctggcaccccgggaccgccaggccctccaggaagagacggg
ggaccggggaagacaggccagaaaggcagccccggcgacgcgggcgccccgggacctaag
ggagacaagggtgaccccggccccgctggcactcctggggagaatggcttggcaggagcc
cccggaccagccggaccaccagggccccccggtccccccgggccaccaggaccaggactc
gccgcagggcttgatgacatggaaggctccggggcacccttctggtcgacggctcaagga
gccagcgggcctcagggtcccgccggcccgcccggggtcaagggggatcccggactaacc
ggaccgccaggcgccaagggagaagttggggctgacggccctcctgggttccccggcctc
cctggcagagagggcacagctggagcccagggacccaaaggagaaaaagggacccaggga
gagaaaggcgaaccagggagggacggagtgggacagcccggcctccccggaccccccgga
cccccggggcctgtcgtctacctgtcggagcaggatagagtgctggccggcgtgcctgga
cccgagggccggccagggttcgcgggttttcccggaccagctgggccgaagggagatgtg
ggctcaaaaggccagcagggcctcccgggacccaagggtgagaagggcgagcccggcccg
gtcttcagccacgatggcagcatgctggcgcccggccagaaaggggccaagggagagcct
ggcttccgaggacccccgggtccctacgggcggccgggtcacaagggagagattggcttc
cccgggcggccgggtcgccccgggatgaacggattgaagggggagaagggggagccggga
cacgccagcgtcggcttcggtgtgaggggtccacctggtcccccagggcctccggggccc
ccagggcctcctggggtccccatctatgacagcaacgcctttacggagtccggccgccct
ggagccccaggattgccagggctccaggggccttctggacccaagggtgacaaaggagac
gtgggccctccaggaccaccagggcagttcccgttggacctcctcccgctggaggctgaa
atgaagggggagaagggggaccgaggggaccctgggccgaagggcgaacggggtgagccc
gggggtggtggattcttcggctcaagtgtgcccggcccccccggcccgccaggctaccct
gggatcccgggtcccaagggagagagcattcggggccagcctggcccacctggacctcag
ggaccccctggcatcggccacgaggggcgtcagggaccccctgggccccctggacccccg
ggccccccagggcccccttcctttcctggcccttaccggcaaaccatcagcgttcccggc
cccccgggcccacctgggccccccgggccccctggaaccatgggcacgtcctccggggtg
aggatctgggccacgtaccagaccatgctggacaaggtgcctgaggtgccggagggctgg
ctcatcttcgtggccgagagggaggagctgtacgtccgggtccgcggcgggctgcggaag
gtcctgctggaggcacggacgccactcccacgcgggacggacaacgaggtggccgccttg
cagcctcctgcgggcaacccatacccccgacgggagctcacccactccacggtgcggccc
tggcgggcagatgacatcctggccagccccccgcgtctgccggacccgcagccctaccct
ggggccccacaccacggctcctaccggcacttccagccggctcgccccaccggcgggccc
acccacagccacacccaccaggactaccagccggtgctgcacctggtggccctgaacagc
ccccagccgggcggcctgcgcggcatccgcggggccgacttccagtgcttccagcaggcg
cgcgctgccgggctgcccggcaccttccgcgccttcctgtcctcacggctgcaggacctc
tacagcgtggtccgccgagccgaccgcaccggcgtgcccattgtcaacctcagggacgag
gagctgttccccagctgggaggccttgttctcgggctccgagggccagctgaagcctggg
gcccgcatcttctctttcgacggcagagacgtcctgcagcacccggcctggccccagaag
agcgtgtggcacggctcagaccccagcgggcgccggctgaccgacagctactgcgaggcg
tggcggacggaggccgcgggcgccgcgggccaggcgtcttccctgctggccggccggctg
ctggagcagaaggccgcgagctgccagcaggccttcatcgtgctctgcatcgagaacagc
ttcatgacctcctcctccaagtag
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