Mustela nigripes (black-footed ferret): 132013607
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Entry
132013607 CDS
T09425
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04151
PI3K-Akt signaling pathway
mnp04382
Cornified envelope formation
mnp04510
Focal adhesion
mnp04512
ECM-receptor interaction
mnp04820
Cytoskeleton in muscle cells
mnp04926
Relaxin signaling pathway
mnp04933
AGE-RAGE signaling pathway in diabetic complications
mnp04974
Protein digestion and absorption
mnp05146
Amoebiasis
mnp05165
Human papillomavirus infection
mnp05200
Pathways in cancer
mnp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
132013607 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132013607 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132013607 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132013607 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
132013607 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
132013607 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
132013607 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
132013607 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
132013607 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
132013607 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
132013607 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
132013607 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mnp04147
]
132013607 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
mnp00536
]
132013607 (COL4A4)
Exosome [BR:
mnp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132013607 (COL4A4)
Glycosaminoglycan binding proteins [BR:
mnp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132013607 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132013607
NCBI-ProteinID:
XP_059249594
LinkDB
All DBs
Position
3:complement(35332834..35456908)
Genome browser
AA seq
1685 aa
AA seq
DB search
MHMASVRCSFRWIKPLATDPWSLMFILFSVQHVYGSGKKFVGPCGGRDCTVCQCFPEKGS
RGQPGPPGPQGPIGHLGMPGPIGIPGEKGMRGDSGLPGAPGDKGDKGPTGVPGFPGLDGI
PGHPGLPGSRGKPGIHGYNGSRGDPGFPGERGVPGSRGPPGLPGESGEKGNSVFILGAIK
GIQGDRGDPGPPGLPGLRGARGPAGPMGHPGEPGLAGAPGLPGRPGLKGNPGVGVKGQMG
DPGEVGQQGSPGPTLLVQPPDFCLYKGEKGIKGMPGVTGPPGPPGPKGEPGIGAKGEKGI
PGFSGPRGDPGSHGSPGFPGLKGEPGMFGEPGSFGFLGPKGDPGDRGYPGPPGVLVTPPL
PLKGPPGDPGRPGHYGEMGSIGPPGPPGPSGPPGEACAGMMGPPGPRGFPGHPGFPGAAG
TPGRADFSPGKPGKPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPQGIKGKMGPPGRRGSK
GEKGDAGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGPPGPPGK
HGVSGPPGSKGEKGDAVVSRVKGQKGERGPDGLPGFPGQQGQHGGDGLPGQRGDPGPPGD
HEDALPGDKGFPGPPGPAGRAGPRGQPGLGFPGPPGERGPPGAPGRPGERGLEGLKGQKG
DTISCNITYPGRPGPPGIDGPPGPKGFPGLRGTPGLRCFDGQKGRRGKPGLSEIPGPPGF
RGDMGDPGFGGEKGSSLLGSPGFPGSRGASGQKGVMGETAYGQPGAPGKRGLSGVPGSKG
HRGDPGHPGFEGAAGRPGFPGLKGPRGKEGSAGFPGIPGLPARSCKGGAPGLPGQPGLRG
APGHPGAPGWKGQRGDMGPPGPAGMKGLPGVPGWPGADGPLGPPGIPGPSGDDGLPGLPG
PKGSQGLPGFPGFPGERGKPGPDGRAGSKGHPGEDGQPGFPGDQGVKGAKGARGPPGDEG
EMAIVSQKGKTGEPGPPGDGGFPGEEGDKGDPGTQGRRGEPGRHGPPGFHRGEPGRTGQP
GLPGPPGPPGSPGPRGIIGFPGFPGDQGEPGSPGSPGRSGIDGMRGPKGDKGDPASQFGF
PGPKGEPGGLGCPGHPGVPGDQGLPGVQGPTGPPGRPGLPGAFGPPGCPGNQGAPGLQGP
PGEMGDPGPRGMVGDPGAPGLPGIKGPSGVPGLNGLHGLKGQKGAKGASGLHEVGPPGPV
GTPGLKGEMGDPGSPGISPPGPSGGRGPPGPPGRPGLPGPAGATGRAPEGDIPDPGPPGD
QGPPGPDGPRGAPGPPGRPGSVDLLKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDG
QKGPLGFPGLQGPPGLPGSPGEKGLPGIPGRQGHPGLPGEPGPPADVESCPRIPGLPGVP
GPRGPEGAMGVPGVRGPPGPGCKGESGPEGRWGKDGLPGPPGPPGSKGDAGEAGCPGAPG
PPGPTGDPGPKGFGPGYLSGFLLVLHSQTDREPACPAGMPQLWTGYSLLYLEGQEKAHSQ
DLGLAGSCLPVFSTLPFAYCNIHQVCHYGRRNDRSYWLASAAPLPMTPLSEEEIRPYISR
CAVCEAPAPVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLED
FRAAPFLECQGRQGTCHFFANKYSFWLTTVRADLQFSSAPTPDTLKESQAQRQRISRCQV
CMKYS
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggcgtcagtaaggtgctcattcaggtggatcaaacccttggccacagatccc
tggtcacttatgttcatcctcttttctgtacaacatgtatatgggagtggaaagaagttt
gtgggtccttgcggaggaagagattgcacagtgtgccagtgctttcctgaaaaagggtct
cggggtcagccaggacctccggggccacaaggtcctattggacacctgggaatgccagga
cccattggaattccaggagagaaagggatgagaggtgacagtggtcttcctggagcgcca
ggtgacaaaggtgataagggtccaactggtgttcctggatttccaggtttggatggtata
cctgggcacccaggacttcctggatccagaggcaagcctggaatacatggctataatggt
tcacgaggtgatccagggtttccaggagaaagaggagttcctggctcaaggggcccccca
ggtcttcctggggaaagtggagaaaaaggaaactcagtgttcattttaggtgccattaaa
ggtattcagggtgacagaggggacccaggacctcctggcttgccgggattgaggggggca
agaggaccggcgggcccaatggggcatccaggagagcccgggttagctggtgctccaggc
cttccagggagaccgggcttgaagggtaatcctggcgtgggagtcaaggggcaaatggga
gacccgggtgaagttggccagcaaggttctcctggacccaccttattggtacagccacct
gatttttgtctgtataaaggagaaaagggcataaaaggaatgcctggtgtgactggacct
ccaggaccaccgggacccaagggagaacctggaattggggcaaaaggagagaagggtatc
cctgggttctcaggacctcggggtgatcctggttcccatggatctccaggttttccagga
ttaaagggggaaccaggaatgtttggggagcctggatcatttggatttcttggcccaaag
ggggatcctggagaccgcgggtacccaggaccaccgggggttttggtaaccccacctctt
ccactcaaaggccctccaggggatccggggcgccccggccactatggagaaatggggtct
attggaccacctggtccccccggcccctccggtccaccaggggaagcctgtgcaggcatg
atgggaccccctgggccaagagggtttcctggtcatccgggatttccaggggcagcaggt
acccctgggagagctgatttcagtccaggaaagccagggaagccaggaccaccggggttg
cctggagccccagggctgcagggccctccgggatcagacgttatatattgtagtgttggg
caccctggaccacaaggaataaaaggcaaaatgggtcctccaggaagaagaggctcaaaa
ggagaaaaaggagacgcggggctctgtgcctgtgagcctggtcccatgggcccacctggc
cctccggggcttcctgggaggcagggtagtaagggagacttggggctccctgggtggctt
ggagagaaaggtcacccaggccctcctggtgcagaaggacctccgggaccaccaggaaaa
catggtgtttcaggaccacctggcagcaaaggagaaaagggtgatgcggttgtatcaaga
gtgaaagggcagaaaggagaaagaggtcctgatgggctcccaggatttccaggacagcag
ggacaacatggtggggatggacttcctggacaaaggggggatccaggccctccgggggat
catgaagacgcactcccaggtgataaagggtttcctggacccccaggtcccgcgggcaga
gcaggacctagaggacaaccaggtctgggatttcccggcccaccaggagagagagggcca
ccaggagctccaggccgccccggtgagaggggcctcgaaggcttgaagggtcagaaaggc
gatacaatttcttgtaacatcacctaccctgggaggccgggacccccaggaattgatgga
cctccaggaccaaagggatttccaggtctccggggcactccggggttgaggtgtttcgat
gggcaaaaaggtcggcgtggcaagccaggactatcagaaataccgggtccacctggtttt
cgtggtgacatgggcgatccgggttttggaggtgaaaaggggtcctcccttcttgggtcc
ccaggcttccctggttctcgtggagcaagtggtcagaaaggagtcatgggagaaactgcc
tatggccaaccaggtgctccaggaaagagaggtctttcaggagtgccagggtccaaaggt
cacagaggtgatccaggacatccaggctttgaaggggcagctggcaggccgggattccca
ggtcttaaaggccccagaggcaaagagggaagtgctgggtttccaggaatcccaggtcta
cctgctcgttcctgcaaaggaggtgccccagggttaccagggcagccgggactccgaggg
gctccaggccatccaggtgccccaggttggaaaggacagcgaggggacatggggcctcct
ggtccagctggaatgaagggcctccctggagtcccgggatggccaggggcagacggtccc
ctgggacccccaggcatcccaggcccctcaggggatgacggactgcctggtcttccaggc
ccaaagggatcccaggggctgcctggcttccctggttttccgggggaaagaggaaagcct
ggccccgatggacgtgctggcagtaaggggcacccaggagaggacggtcagcccggcttc
cctggagaccagggggtgaaaggtgccaaaggagcgagaggacccccaggagatgaagga
gagatggctatcgtttcccaaaaggggaaaacaggggaacctggacctccaggagatggt
ggattcccaggagaagaaggtgataaaggcgatcctgggacacaggggaggagaggagag
cccggaagacacggaccacctggatttcacagaggggagcctggtagaaccgggcagcca
gggcttccagggcccccaggccccccaggctcacctggtccaagagggattattggtttt
ccgggatttccaggtgaccagggtgagccgggttctccagggtccccaggacgttcggga
attgatggaatgagaggacctaaaggagacaaaggagaccctgcaagtcagttcggcttc
cctggtccaaagggtgaaccaggtggccttggatgtccaggacatcccggagtacccgga
gatcagggcttgcccggcgttcaaggccccacaggaccacccggaaggccaggattacct
ggtgcctttggaccacccgggtgtccaggtaatcaaggggcacctgggctgcagggacct
ccaggagaaatgggggatcctgggccaagaggcatggtgggagatccaggggcaccagga
ctcccaggaataaaaggtccctccggggtgcccggtctgaacggcttgcatggtttaaag
ggtcagaaaggagccaaaggcgcttcaggtttgcacgaagtgggcccgcctggtccagtg
ggcacacctgggctaaaaggggagatgggagaccctgggagtccgggaatttctccccca
ggcccttctggaggaagaggtccccctggccccccagggagacctggattgcctgggcca
gcaggtgccacaggaagagctcctgaaggggacattcctgacccaggtccaccaggagat
cagggacctcctggccccgacggtccaagaggagctcccgggcccccaggccgccctgga
agtgtcgaccttctgaaaggggaaccaggagactgtggtcttccaggacctccaggtccc
ccaggcccacccggccctccaggacgcaaaggcttcccaggatgtgatggaaaagatggc
cagaaaggaccattgggattcccggggctgcaggggccaccaggacttcccggttccccc
ggggagaagggtttacctggcattccaggcagacaagggcaccccggtcttccaggagaa
ccaggaccgcctgccgatgtggagtcctgccctcgaatcccggggcttcccggggtacca
ggcccgagaggaccagaaggagccatgggggtccctggagtgagagggcccccgggacca
gggtgcaaaggagagtctgggccggagggcaggtggggcaaggatggcctcccaggaccc
cctgggcctcctggaagcaaaggggacgcgggagaagccggctgccctggagcaccaggc
cctcctgggcccactggggaccctgggcccaaagggtttgggcctggatacctcagcggc
ttcctcctggttctccacagtcagacggacagagaacccgcctgccctgcgggcatgccc
cagctctggacgggctacagcctcttatacctggaaggacaggagaaggcgcacagtcaa
gaccttgggctggcagggtcttgccttcccgtgttcagcacgctgcccttcgcctactgc
aatatccaccaagtgtgccactacggccggaggaacgaccggtcctactggctggcgagc
gccgccccgctgcccatgaccccgctgtcggaggaggagatccgcccgtacatcagccgc
tgtgcggtgtgcgaggccccggcgccggtggtggcgctgcacagccaggaccagtccatc
cccccgtgcccgcggacctggaggagcctgtggatcgggtactcgttcctgatgcacacg
ggggctggggaccagggaggagggcaggccctcatgtcccctggcagctgcctggaagat
ttccgagccgcgccgttcctcgaatgccaaggccgccagggaacttgccacttttttgcc
aacaagtatagcttctggctgacgaccgtaagagccgacttgcagttttcctctgcaccg
acgccggacaccttaaaggagagccaggcccagcgccagaggatcagcaggtgccaggtg
tgcatgaagtacagctag
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