Mustela nigripes (black-footed ferret): 132014206
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Entry
132014206 CDS
T09425
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03015
mRNA surveillance pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132014206 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
132014206 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132014206 (PABPC1)
03041 Spliceosome [BR:
mnp03041
]
132014206 (PABPC1)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132014206 (PABPC1)
mRNA cycle factors
Stress granule specific factors
132014206 (PABPC1)
Spliceosome [BR:
mnp03041
]
Complex C
Other components
Complex C specific factors
132014206 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
132014206
NCBI-ProteinID:
XP_059250917
LinkDB
All DBs
Position
3:complement(161515710..161531869)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
caaccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggctccaaaggttat
ggatttgtacattttgagacacaggaagcagctgaaagagctattgaaaaaatgaatggg
atgctactaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaacgagaa
gcagaactcggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gatatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggttttggatttgtaagcttcgaaagg
catgaagatgcacagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacaa
atatacgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgacgaacgtctccggaaagagttttctccttttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcctccccagaagaagccacaaaagcagttacagaaatgaacggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagagaatggcaagtgtaagagctgtgcccaatcctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccgcgagtcatgtcaacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcccgcagctgccgctgccgca
gctactcctgctgtccgcaccgttccgcagtataagtacgctgcaggagtccgcaatcct
cagcaacatcttaatgcacagccacaagttaccatgcagcagcctgctgttcatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgaacggctctttcctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagatcgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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