Mustela nigripes (black-footed ferret): 132014606
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Entry
132014606 CDS
T09425
Symbol
PABPC4L
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03015
mRNA surveillance pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132014606 (PABPC4L)
09123 Folding, sorting and degradation
03018 RNA degradation
132014606 (PABPC4L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132014606 (PABPC4L)
03041 Spliceosome [BR:
mnp03041
]
132014606 (PABPC4L)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132014606 (PABPC4L)
mRNA cycle factors
Stress granule specific factors
132014606 (PABPC4L)
Spliceosome [BR:
mnp03041
]
Complex C
Other components
Complex C specific factors
132014606 (PABPC4L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_7
RRM_Nup35
RBD_DEAH11
RRM_10
RRM_occluded
RRM_MARF1
Nup35_RRM_2
RBD_RDR6
DUF4523
RRM_3
Motif
Other DBs
NCBI-GeneID:
132014606
NCBI-ProteinID:
XP_059251517
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All DBs
Position
1:complement(193865169..193867082)
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AA seq
370 aa
AA seq
DB search
MNVAAKYRQASLYVGDLNADVTEDLLFTKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLK
LADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSA
FGKILSSKVMTDDQGSRGYAFVHFQNQVAADRAIEEMNGALLKDCRLFVGRFKNRKDREA
ELQNKVNEFTNVYIKNFGDDMDDERLKEVFGKYGKTLSVKVMTDSSGKSKGFGFVSFDSH
EAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRSRGMKLYIKNL
DDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSK
PLYIALAHRP
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtagcagccaagtaccgccaggcctccctgtatgtgggtgatctcaatgcagat
gtcaccgaggacctgctgttcacaaagttcagcgccgtggggcctgtgctgtccatccgc
atctgcagggacctggtcacccgccgctcgctgggctatgcctacgtgaacttcctgaag
ctggctgatgcccagaaggccctggacacaatgaactttgacatgataaaaggcaaaccc
atccgtctcatgtggtctcaacgtgatgcctacttaaggaaatctggcattgggaacgtg
ttcatcaagaatctagacaaatctattgataacaaaaccctttatgaacatttttcagct
tttgggaagatcctgtcctccaaagtgatgactgatgatcaaggctctaggggttatgca
tttgtgcactttcagaaccaggtcgcagctgacagggccatcgaggagatgaatggggcc
ctgcttaaggactgcaggctgtttgttggccgattcaaaaaccgtaaagatcgggaagct
gagctccaaaacaaggtcaatgaattcaccaatgtttacatcaaaaactttggcgatgac
atggatgatgagagactgaaggaagtttttggtaaatatggcaaaaccctgagtgttaag
gtgatgacagattccagtgggaaatccaaaggctttggctttgtgagttttgatagccat
gaggctgccaaaaaagctgttgaagaaatgaatggaaaggacataaacggacagctgctt
tttgtaggccgggcgcaaaagaaatcagagcggcaggctgagttgaagcaaatgtttgag
cagctgaaacaggaaagatttcggagaagccggggcatgaagctctacattaagaacctc
gatgataccatcgatgatgaaaaactgtggagggaattttcttcatttggatcaattagc
agagtcaagataatgcgggaagaagggcgaagcaaagggtttgggttgatctgcttctct
tctcctgaggaggccactaaagcaatggctgagatgaatgggcgaatcttgggctccaag
ccactctacattgccctggcccacaggccctag
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