Mustela nigripes (black-footed ferret): 132015674
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Entry
132015674 CDS
T09425
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132015674 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mnp03000
]
132015674 (CNOT4)
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132015674 (CNOT4)
04121 Ubiquitin system [BR:
mnp04121
]
132015674 (CNOT4)
Enzymes [BR:
mnp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132015674 (CNOT4)
Transcription factors [BR:
mnp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
132015674 (CNOT4)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132015674 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132015674 (CNOT4)
Ubiquitin system [BR:
mnp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132015674 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
132015674
NCBI-ProteinID:
XP_059252328
LinkDB
All DBs
Position
4:17358850..17500105
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNPATTDSLSW
DSPGSWTDPAIITGIPATSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcgaaggaagaccctgtggaatgtcctctttgcatggagcct
ttggagatagatgatatcaactttttcccttgcacctgtggctatcagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcgtgtagaaagccatat
ccagaagacccagcagtttataaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacagaacgagagaaaacagaaaatatcagaaaaccgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtggta
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtatctacatgaattgggggatgaggcg
gccagcttcacgaaagaggaaatgcaggcgggtaagcaccaagaatatgaacagaaacta
cttcaagaattatataagttaaaccccaattttcttcaactatctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccccattgacaaaccttca
gattctctcagtatagggaatggtgataattcccagcagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggggcagtaactgagtcacagtcgttattctcagataac
tttcgccatcccaacccaatcccaagtgggcttcctcctttccccagctccccacagaca
tccagtgactggcctacagcaccagagccacagagtctcttcacatcagaaacaatccca
gtatcatcctctacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacctgattgaa
aaggaactgtcagtccaagaccagccttccctttcgcccacatctcttcagaactcctct
tcacacactacaaccgccaaaggtccgggctctggattcctgcatcctgctgcaccgaca
aatgccaactctctcaatagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcctcctccccc
tccaacgccaaccacagtgcaccaacgtccaaccctgccaccaccgacagcctgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcaacttcagga
aacagtttagactctcttcaagatgacaatcctccacactggctaaaatcccttcaggcc
ctcacagagatggacggccccagtgctgctccgtcacagacccaccacagcgcccccttc
agcacacagatccctctgcacagagccagttggaatccctacccccctccttcaaaccct
tccagcttccactccccacccccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatttactacagagttcaacactggaccgccattag
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