Mustela nigripes (black-footed ferret): 132016133
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Entry
132016133 CDS
T09425
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132016133 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnp03021
]
132016133 (TAF5L)
03036 Chromosome and associated proteins [BR:
mnp03036
]
132016133 (TAF5L)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132016133 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
132016133 (TAF5L)
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132016133 (TAF5L)
STAGA complex
132016133 (TAF5L)
TFTC complex
132016133 (TAF5L)
SAGA complex
132016133 (TAF5L)
SLIK complex
132016133 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
RMC1_N
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
eIF2A
Ge1_WD40
WD_LRWD1
Nbas_N
Beta-prop_ELP1_1st
Mala_s_1-like
ODR4-like
vATP-synt_AC39
Motif
Other DBs
NCBI-GeneID:
132016133
NCBI-ProteinID:
XP_059253242
LinkDB
All DBs
Position
4:107542855..107573618
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYDYLIRYLQ
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSESSGLEPTDMPAPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHPVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLSSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTHCSAPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcaccgagcagattcagatggcagtgtcctgctacctcaaacgccgg
cagtacgtggactccgacggtcccctgaagcaaggactgcggttgtcacagactgctgag
gagatggcagccaacctcacagtccaatcagaatccggttgtgccaacatagtgtctgca
gccccttgccaggcagagccccagcagtatgaagtacagtttggacgactacggaatttt
ctcactgattctgattcccagcatagccacgaagtgatgcctctcctctatcctctcttt
gtctacctccatctcaacctggtccagaatagtccgaagagcacagtggaaagtttttac
agccgcttccatggaatgtttctgcagaacgctagccagaaggatgtcattgagcagcta
cagaccactcaaaccatccaggacatcctgtctaacttcaagcttcgagcattcctagat
aacaagtacgtggtccgtctccaggaagacagctacgactaccttatccgctacctccaa
agtgacaacaacaccgccctgtgcaaagtcctcaccttacatatccatcttgacgtgcag
cccgccaagagaacagattaccagctctacgccagcggcagctcctctcggagtgagagc
agtggcctcgagcccactgacatgcctgcccctattctgcagaacgaggctgccctggag
gtcttgcaggagagcattaagcgcgtcaaagatggccctccctccctcaccaccatctgt
ttctatgccttctataacacagagcagctgttgaacactgcagaaatctccccagatagc
aagctgcttgctgcggggtttgacaactcctgtataaaactgtggagtttacgatccaag
aagttaaaatcagaaccccatccagtagacgtgtcccgcatccacttggcttgtgacatt
ctggaggaggaggatgatgaggatgacaatgcgggcacagagatgaagatcctccgggga
cactgtggaccagtatacagcacaaggttccttgcagacagctcagggttgctctcttgt
tctgaagacatgtccattaggtactgggacctcagcagtttcaccaacactgtgttgtac
caaggacatgcctaccctgtgtgggacctggacattagcccatatagcctgtactttgcc
agcgggtcccatgaccgcaccgcaaggctgtggtcatttgatcggacgtacccgctgaga
atatatgccggacacctggcagatgtggactgtgtcaaattccaccctaattcaaactac
ttagccacgggctcgaccgacaagactgtccggctgtggagcgctcaacagggcaactca
gtgaggctcttcacgggccaccgcggccccgtgctctctcttgccttctctcctaacggt
aagtacttggcatcagccggcgaggaccagcggctgaagctatgggacttggcctctggg
accctttataaagaactgaggggccacacggacaatatcaccagcctcaccttcagcccg
gacagcagcctgatcgcgtccgcgtccatggacaactccgtgcgcgtctgggacatcagg
aacacgcactgcagtgcacctgccgacggctcctcgggcgaactcgtgggcgtgtacacc
gggcagatgagcaacgtgctgagcgtgcagttcatggcctgcaacctccttctagtgact
ggaatcacacaagaaaatcaggaacattaa
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integrated database retrieval system
