Mustela nigripes (black-footed ferret): 132016748
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Entry
132016748 CDS
T09425
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
mnp
Mustela nigripes (black-footed ferret)
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mnp03009
]
132016748 (PDCD11)
Ribosome biogenesis [BR:
mnp03009
]
Eukaryotic type
90S particles
Other 90S particles
132016748 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Spt6_S1
HAT_PRP39_C
OB_RRP5
HAT_Syf1_CNRKL1_C
Suf
OB_RRP5_4th
TPR_14
TPR_19
ARM_TT21
NRDE-2
TPR_CcmH_CycH
TPR_16
ARM_TT21_N
ARM_TT21_5th
TPR_15
DUF2110
UTP6_C
TPR_2
DUF7017
ARM_TT21_C
DUF2642
PPR
Motif
Other DBs
NCBI-GeneID:
132016748
NCBI-ProteinID:
XP_059254464
LinkDB
All DBs
Position
4:166817538..166859628
Genome browser
AA seq
1870 aa
AA seq
DB search
MEESFPRGGTRKTHKSEKALQKSVEQDNLFDLSTEEESTKRKKSQKGPAKTKKLKTEKRE
SSKSIREKFEILNIESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKL
NEQVAQEEPVKDLVGLPELFSPGMLVRCVVSSVGITERGKKSVKLSLNPRNVNEVLSAEA
LKPGMLLTGTVSSLEDHGYVVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLHCII
EEVKGNGGVVGLSIGHSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSF
FTGLVDFMHLDPKKAGTYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTQLSCQH
LGAVLDDVPVQSFISKAGATFRLKDGALAYARLSHLSDSKNVFSADSFKPGNTHKCRIID
YSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTIKPYGMLVKVGEQIRGLIPPM
HLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITSYADAKPGL
QTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSK
ERMLLSFKLLSDPKKEHLGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPYNTPAFLP
TPHLSDHVANGPLLYHWLQTGDTLHRVLCLSQSEGRILLCRKPALVSTVEGGQDPKSFAE
IHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTN
VDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTP
GMVLDLEVQEVLEDGSVVFSEGPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLE
VHVSLCHDLVNRRAKKLKKGSEYQAVVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRF
DSEKLQVGQGVSLTLKTTEPGVTGFLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVV
GTLKKHTLSIGDMVKGTVKSVKPTHVVVTLEDGIIGCIHASHILDDVPLGTSPTAKLKVG
KTITARVIGGRDMKTFKFLPISHPRFIRTIPELSIRPSELEKDGCTALNTHSVSPSEKVK
QYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALK
ATVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKIGRVSVFHLS
DSYSETPLEDFVPQKVVRCYVLATTGHVLTLSLRSSRTNPKTKSKITDPEINSIQDIQEG
QLLRGYVKSVQPHGVLFRLGPSVVGLARYPYVSQYSPSDKALYNKHLPEGKLLTAKVLSL
NREKNLVELSFLPDDTGKPDVFPASLGLPLLKQEEREREAAEKEHKGEEEKKKNPKRKRK
RNQEGPEEAQPSGQEKSEAQKPQAEKRGRRRRRESASEQERVNKKQKKVAPSEEDDSGVE
VYYREGEEEVEEMSVLPKGKPTRPAEAPRLQLSSGFVWDVGLDSLTPALPPRGDSSDSEE
DNEPQQAMQKKSKKERLLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSIL
WLQYMAFHLQATEIEKARAVAKRALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVF
ERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQA
GASHRVMQRALECLPIKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVY
IDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY
VEAKSAVLED
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacaagaaagactcacaaatcagagaaagctttg
cagaagtccgttgaacaagacaacttatttgatctttctactgaagaggaatccaccaaa
aggaaaaagagccagaaagggccagcgaaaacaaaaaagttgaaaaccgaaaagagagaa
agcagcaagtctataagagagaagtttgaaatacttaatattgagtccctgtgtgagggg
atgcggattttgggttgcgtgaaggaagtaaatgaactggaactggtgattagtctcccc
aatggactccggggctttgtgcaagtgactgaaatctgtgatgcctacaccaaaaagctg
aatgagcaggtggctcaagaagaacctgtgaaggacctggtcggcttgcctgaactcttc
tcacctggcatgctggtgaggtgtgtggtgagcagtgtgggcattacagagaggggcaaa
aagagtgtcaaattatctctgaaccccagaaacgtcaacgaagtgctaagtgctgaggcc
ctgaagcctggcatgctgctcacaggcactgtgtccagcctggaagaccatggctacgtt
gtggacattggtgttagtggggccagagcctttctgccactacagaaagcccaggagtat
atccgacagaagaacaaaggtgctaaactgaaggtggggcagtacctgcactgcatcatt
gaggaggtcaaaggcaacggaggagtggttggtctgtctattggtcattctgaagtttct
gctgccattgctactgaggagcaaaactggacccttaataacttgctaccaggactggtg
gtcaaagcccaggtacagaaggtgactccagttggccttacattaaactttctttcattc
ttcactggcctggtcgactttatgcacctggatcccaagaaagctggaacatatttctca
aatcaagcagtaagggcttgtgttctctgtgtccatcctcggaccagggctgtgcggctg
agcctgcgtcctgtcttcctgcagccgggacgctccctcacccagctctcttgccagcat
ctgggagccgtgctggatgacgttcctgtccagagctttatcagcaaggccggcgccacc
ttcaggctgaaggatggggcactggcctatgcccggctcagccatctctccgactcgaaa
aacgtcttcagtgctgactcctttaagccagggaacactcacaagtgtagaatcatcgat
tacagccaaatggatgagctagccttgctctctctgaggacgtccattattgaagctcag
taccttagatatcatgacatcaaacctggggcactggtagagggcacagtgctgaccata
aagccatatgggatgctggtgaaggtgggcgagcaaatccggggcctgataccacccatg
cacctggccgacatcctgatgaagaatccggaaaagaagtaccacatcggggatgaggtc
aagtgccgggttttgctttgtgatcctgaagccaagaagctgatgatgacgctgaagaaa
accctaattgagtccaagctgcctgccattacctcttacgctgatgccaagcctggtctg
cagacccatggcttcatcctcagggtcaaggactatggctgcatcgtgaaattctacaac
gatgtgcagggactggtgcccaagcatgagctcagtgccgagtatgtccctgacccagag
agggtcttttacgctggccaggtggtgaaggttgtggtgctgaactgtgagccatccaaa
gagaggatgcttttgtccttcaagctgttgagtgatccaaagaaggagcatctgggacac
agtcagaagaaaagaagaactgttagccttggacagttggtggatgtgaaggttttagag
aagaccaaagacgggctggaggtagctgtcctgccctacaacacccccgctttcctcccc
acgcctcatctgtcggaccacgtcgccaatggccctctgctgtatcactggctgcagact
ggtgacacccttcacagagtactctgtctcagccagagtgaggggcgtattctcctttgt
aggaagccagctttggtctccaccgtggagggtggccaggatcctaaaagcttcgcagaa
atccatcctgggatgctgctcatcggttttgtgaagagcatcaaggactatggtgtgttc
gtccagttcccgtcaggtcttagtggactggcccccaaagctatcatgagtgacaagttt
gtgacttctacaagtgaccacttcgtcgaggggcagacagtggttgcgaaggtgaccaac
gtggatgaggagaagcagcgcatgctgctgtcgctgcggctgtcggactgtggtctgggc
gacctggccaccaccagtctcctcctcctgagccagtgcctggaagagcggcagggtgtg
cgcagcctcatgagcaaccgagactctgtgttgatccagacgttggctgagatgacaccc
gggatggtccttgacctagaggtgcaggaggtgttggaggacggctctgtagtgttcagt
gagggccccgtgcctggcctggttctgagggccagcagataccatcgggcagggcaggag
gtggaacctgggcagaagaagaaggttgtcatcttaaatgttgatatgttgaaattggag
gtacatgtttccctttgccacgatttggtgaacagaagagctaaaaagctgaagaaaggc
agcgagtaccaggcagtcgtgcagcacttggaggagtcctttgctgtcgcctccttggtt
gagactggccacctggcagctttctccttgacctctcacctcaatgacaccttccgcttc
gactcagagaagttgcaggtgggacagggtgtctccctaaccctcaagaccacagaacca
ggagtgaccggttttcttttggctgttgaggggccagctgctaagaggactgtgagacag
acccggaaggactctgagaccgtcgatgaggacgaggaagcagatccagctcttgttgtt
gggactctaaagaagcacaccctgtccatcggggacatggtcaaaggcactgtcaagtcc
gttaagcccacccatgtggttgtgacactggaagacggcatcattggttgtattcatgcc
tcccacattctagatgatgttccactgggcacatctcctactgccaaactgaaagttggg
aagacaatcactgcccgagtgattggtgggcgagacatgaagacgttcaagtttctccca
ataagtcatcccagatttattcgaaccattccagagctgagtatccggccaagtgagctg
gagaaggatggctgcactgctctcaacactcactctgttagcccctcagagaaggttaaa
cagtaccaggctgggcagacgttgatttgtttcttgaagaagtacaacgtggttaagaaa
tggctcgaggtggagattgctccagacatccggggcaggattcccttgttgcttacctcg
ctcagcttcaaggttctaaaacatccagataagaagttccggattggccaggctctgaag
gctactgtggttggcccagattcttccaaggctttcttgtgtctctcacttataggtcct
cacaagcttgagaagggggaagtggccatgggccgagtggtgaaggtgactcccaaggag
gggctgactgtctccttcccctttgggaagattggaagggtcagtgtatttcacttgagt
gactcctattcagagacacccctggaagacttcgtcccccagaaggttgtcaggtgttac
gtcctggctactacaggccatgtattgactctgtcactgcgatcgtccaggacaaacccg
aagacgaagagcaaaataactgatcctgagatcaactccatccaggacattcaggaaggg
cagctcctgaggggctacgtgaagtctgtccagccgcatggcgtgctcttccgccttggc
ccctctgttgtgggtttggcccgatatccgtatgtctcccagtacagtccatctgacaaa
gccctttacaacaaacacctcccggaagggaagctgctcacagccaaggtcctgagccta
aaccgtgagaagaacctggtagagctgtcgttcctccctgatgacacggggaagccggac
gtgtttcctgcctccctaggactgccacttctaaaacaagaggagagggaaagggaggca
gcagagaaagagcacaaaggagaagaagagaagaagaagaatccgaaaaggaaaaggaag
aggaaccaggaggggccagaggaggcacaaccgtccggccaggagaagagtgaggcccag
aaaccgcaggcagagaagcggggcaggcggcggcgccgggagtctgcaagcgagcaggaa
agagtgaacaagaagcagaagaaagttgctccgtcagaggaggatgacagcggtgttgaa
gtgtactatcgggagggagaagaggaggtggaggagatgagtgtgctgcccaaggggaag
ccgaccaggccagcagaagcgccccggctccagctgtcctctggtttcgtttgggacgtg
ggactagactctctgaccccggcattaccacctcgaggagacagctcagacagcgaggag
gacaacgagccgcagcaggccatgcagaagaagagcaagaaggaaaggctgctggagaag
cagaaggcagagaaagaactgtcccgcattgaggaggctctcatggatcctgggcgacag
ccagagtcagcggatgattttgaccgcctcctgcttagctcccccaacagctccatcctg
tggctgcagtacatggccttccacctgcaggccacggaaatcgagaaggcccgggccgtg
gccaagagggctctcaagaccatttccttcagagaggagcaggagaagctgaacgtgtgg
gtggcgctgctcaatctagaaaacatgtacggctctcaggagtcactgaccaaggtcttc
gagcgggctgtgcagtacaacgagcctctcaaggtctttctccatctggctgacatctac
gccaagtcagagaaattccaggaagctggtgaactctacaaccggatgctgaagcggttc
aggcaggagaaagctgtctggatcaaatatggcgcctttcttctgcggaggggccaggct
ggggccagtcaccgtgtgatgcagcgagctctcgagtgtctgcccattaaagagcatgtg
gatgtgattgccaagtttgcccagctggagttccagctgggggatgcagaacgggccaaa
gccatttttgagaacacactgagcacctacccgaagcgcactgacgtctggtcggtttac
atcgacatgaccattaagcatggcagccagaaggaagtccgggacatctttgaacgggtc
attcatctcagcctggcccccaagcgaatgaaattcttcttcaagcgctacctggactat
gagaaacaacatggcactgagaaggatgtgcaggcagtaaaggcgaaggccctggaatat
gtggaagctaagagcgccgtgttggaggactag
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integrated database retrieval system
