Mustela nigripes (black-footed ferret): 132017519
Help
Entry
132017519 CDS
T09425
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132017519 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132017519 (PNLDC1)
Enzymes [BR:
mnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132017519 (PNLDC1)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132017519 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
132017519
NCBI-ProteinID:
XP_059255276
LinkDB
All DBs
Position
5:142127127..142145387
Genome browser
AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGITGFQAFEVQLVLRQALPDIWTVPRDQGIIVKKVSKQHRWYLENTSGDRASCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTRNSGPVVIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLAWRVRGAGSMPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDCPSIRPPILLLHVRKWPGVSEQQVYREFQNLCKFDVRRLSRSQFLLLTNKFKDAR
SILKEYRGHPTLQVSLYRYWRHSPNISCLLQVCGVVTTWALLALLLGRPGH
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagtctccctctgctgcaggagcttgtcttg
ggcgctgacttcgtgggtctggacatagaattcacgggccttcgctctaacctgtcccgc
ccccagcagatcagtctctttgacttgccctcggagtggtatctaaaaacccgccacagt
gtccagcagttcacaatctgtcagattggattgtctgtgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcatgtaacttctttctcttcccgacgacatttgggatc
ttggattcagaattctctttccaggcttctagtgttcagtttttgaatcagtatggcttc
gattacaacaagtttctcaaaaatgggatcccatatatgaatgaagagcaggagaagaaa
attaaacacaacatcctgactggaaactggagagttcgcagttctctggataaagaccag
atcaaggtggtgatcgatgaggtgacaaggtggctggacttggcagaggagggcgactgg
atgactctccctggtatcactggcttccaggcttttgaggtccagctggtgctgcggcag
gccctccccgacatctggacggtcccgagagaccaggggataatagtgaaaaaagtgagc
aaacagcatcggtggtatcttgagaacacctccggtgatcgagcgagctgttggaaggag
aagattcttctctctgcaaggggtttttccgtgtttttccagatgctggtgaaagcccaa
aagcccttagtgggccacaacatgatgatggacctgctgcatctccacgagaagttcttc
aggccactcccagaaagctatgatcagtttaagctgaacatccacaacctgtttcctgtt
ctcattgacaccaagaacgtgaccaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctttcagaagtttatgaagtcctaaacagcgacttgaatccgaccagaaattcc
gggccagtggtcattcacgcgagcaagtgtgaaaaatacgtggagaccaagtacccccac
gaggccgcgtacgatgccttcctctgtggatcagttctcctgaaagtggcccacttgctc
gcatggagagtgcgcggtgccggctccatgccagagccctccttccctctgtacctcgac
gtgctggctccctatgtgaaccaggtgaatctaatccgagccggggtccctaagattaat
ttctcaggtccagactgccccagtatccgacctcccatcctcctcctccatgtccggaag
tggccaggggtcagcgagcagcaggtctaccgtgagtttcagaatctttgcaagttcgat
gtgcggcgactctcgcggagccagttcctgcttttgaccaataagtttaaggatgctcgg
agcatcctgaaggagtacaggggccaccccaccctgcaggtgtccctgtaccggtactgg
aggcactccccgaacatcagctgcctgttgcaggtctgtggcgtggtcaccacctgggcc
ctcctggcgcttctcctcggaagacctggccactga
DBGET
integrated database retrieval system
