Mustela nigripes (black-footed ferret): 132017778
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Entry
132017778 CDS
T09425
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03013
Nucleocytoplasmic transport
mnp03015
mRNA surveillance pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132017778 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
132017778 (DDX39B)
03015 mRNA surveillance pathway
132017778 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132017778 (DDX39B)
03041 Spliceosome [BR:
mnp03041
]
132017778 (DDX39B)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132017778 (DDX39B)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132017778 (DDX39B)
Spliceosome [BR:
mnp03041
]
Complex C
Other components
EJC/TREX
132017778 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132017778 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132017778
NCBI-ProteinID:
XP_059255782
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All DBs
Position
5:complement(28127156..28139925)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtgaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctgaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatggggaagacagcggtgtttgtg
ctggccacactgcagcagctggagccagttactggacaggtgtctgtgctcgtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgttgtggggacccctggccgcatcctcgccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcccgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctagtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggatattgagcgggtgaacattgccttc
aattatgacatgcctgaggattctgacacctacctgcatagggtggcccgagcaggtcgg
tttggcactaagggcttggccatcacgtttgtgtcagatgaaaatgatgccaagatcctc
aatgatgtgcaggatcgatttgaagtcaatattagtgagctgcccgatgagatagacatt
tcctcttacattgaacagacgcggtag
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integrated database retrieval system
