Mustela nigripes (black-footed ferret): 132017810
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Entry
132017810 CDS
T09425
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
132017810 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
mnp01007
]
132017810 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mnp03016
]
132017810 (VARS1)
Enzymes [BR:
mnp01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
132017810 (VARS1)
Amino acid related enzymes [BR:
mnp01007
]
Aminoacyl-tRNA synthetase
Class I (U)
132017810 (VARS1)
Transfer RNA biogenesis [BR:
mnp03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
132017810 (VARS1)
Prokaryotic type
132017810 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1_2
tRNA-synt_1g
Val_tRNA-synt_C
GST_C_2
tRNA-synt_1e
Arc1p_N_like
Jag_N
Motif
Other DBs
NCBI-GeneID:
132017810
NCBI-ProteinID:
XP_059255869
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All DBs
Position
5:complement(28352094..28365593)
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AA seq
1265 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRAPFPPPRLPAL
EQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPALG
LRTSTQDPQAALGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLDPSA
RRIWGNVTRWFITCVQQPEFRAVLGEVVLYSGARPLSQQPGPEVLVPPKTATQLKKEAKK
REKLEKFQQKQKTQQQQPPPAEQKKPKPEKRGKRDPGVITYDLPTPAGEKKDVSGTMPDS
YSPQYVEAAWYPWWEQQGFFKPEYGRSSVSAPNPRGIFMMCIPPPNVTGSLHLGHALTNA
IQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKW
KEEKGDRIYHQLKKLGSSLDWNRACFTMDPKLSTAVTEAFVRLHEEGVIYRSTRLVNWSC
TLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKIQGSDSDEEVVVATTRIE
TMLGDVAVAVHPKDPRYQNLKGRSVIHPFLSRSLPIVFDDFVDMEFGTGAVKITPAHDQN
DYEVGQRHGLEAVSIMDSRGALVNVPPPFLGLPRFEARKAVLAALKERGLFRGVEDNPMV
VPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHTWMDNIRDW
CISRQLWWGHRIPAYFVTVSDPAVPPGEDPDERYWMSGRSEAEAREKAAKEFGVSPDKIS
LQQDEDVLDTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLK
LTGKLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLSSNLDPSEV
EKAKEGQKADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKF
ALRGLGKGFVPSPTSKPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFSAVTTAQYSFWL
YELCDVYLECLKPVLNGVDQVVAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT
PQAPPSLCITPYPEPSECSWKDPDAEAAMELALSITRAVRSLRADYNLTRIRPDCFLEVA
DEATGALASAVSGYVQALASAGVVAVLALGAPVPQGCAVALASDRCSVHLQLQGLVDPAR
ELGKLQAKRSEAQRQAQRLRERRAASGYPSKVPLDVQEADRTKLQQTEAELRKVDEAIAL
FQKML
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctgtatgtctcccctcatcctgacgccttccccagcctccgtgcccttata
gctgcacgctatggggaggctggggaagggccgggctggggaggagcccacccccgaatc
tgcctccagccacccccgacgagcagggctccctttcccccaccccgcctgcccgccctg
gagcaggggcctggtggactctgggtgtggggggccaccgctgtggcacagctgctgtgg
ccggcaggcttggggggccctggcggtagccgggctgctgtcctggtccaacagtgggtc
agttacgccgacactgagctaataccagctgcttgtggagcaacgctgcctgccttgggg
ctccgaacctctactcaggaccctcaggctgccctcggggccctgggcagggccctgagt
cccctggaagagtggctccggctgcacacctatctggccggggaggcccccacgctggct
gacctggcagctgtcacagccttgttgctgcctttccgttacgtcctggacccctctgcc
cgccggatctggggtaatgtgactcgctggttcatcacatgtgtccagcagccagaattc
cgggcagtgctgggagaggtggttctgtactcgggggccagacccctctctcaacagcca
ggccctgaggtccttgtacccccaaagacagctactcagctcaagaaagaggcaaagaaa
cgggagaagctggaaaaattccaacagaagcagaaaacccaacaacagcagccacccccg
gcagagcagaagaagccaaaaccagagaagagggggaaacgggatcctggggtcattacc
tatgacctcccaaccccagctggggaaaagaaagatgtcagtggcaccatgcccgactcc
tatagccctcagtacgtggaagctgcctggtacccgtggtgggagcagcagggcttcttc
aagcccgagtatggacgttccagcgtgtctgcaccaaatccccgcggaatcttcatgatg
tgcatcccaccccccaatgtgacaggctccctgcatctgggccacgcactcaccaatgcc
atccaggactccctgacccgatggcaccgcatgcgcggggagaccacgctatggaaccct
ggctgtgaccacgcaggcattgccacccaggtggtggtggagaagaaactctggcgtgag
caggggctgagccggcaccagctaggccgagaggccttcctacaggaggtctggaaatgg
aaagaggagaaaggtgaccggatttaccaccagctgaagaagcttggcagctccttggac
tggaatcgagcctgtttcaccatggaccctaaactctccacagctgtgacggaggccttt
gtccggctccatgaggaaggagtcatctaccgcagtacccgcctcgtcaactggtcctgc
acactcaactctgccatctccgacatcgaggtggataagaaggagctgacaggtcgtact
ctgctctccgtgcctggctacaaggagaaggtggaatttggggtccttgtctcctttgcc
tacaagatccaaggctcagacagtgacgaggaggtggtggtggcgacaacacggatcgaa
acaatgctgggagatgtggccgtagctgtgcaccccaaagatcctagataccagaacctg
aaggggaggagtgtgatccacccattcttgtctcggagcctccccattgtcttcgacgat
tttgtggacatggagtttggcacaggtgcggtgaagatcacccctgcacatgaccagaac
gactatgaggtcgggcagcgacatgggttggaggctgtgagcatcatggactcccgaggg
gccctcgtcaacgtgcccccgcctttcctgggcctgcccaggtttgaggccaggaaggcg
gtgctggcagcactgaaggagcggggactgttccggggtgttgaggacaaccccatggtg
gtgccgctctgcaaccgctccaaggatgtggtggagcctctgctgcggccacagtggtac
gtgcggtgtggggagatggcccaggccgccagtgctgccgtgacgcggggtgacctccgc
atcctgcctgaggcccatcagcggacgtggcacacttggatggacaacatccgggactgg
tgcatctcccggcagctgtggtggggccaccgcatcccggcctactttgtcacagtcagt
gacccagccgtacccccaggggaggacccagatgagcggtactggatgagcgggcgcagc
gaggctgaggcccgggagaaggcagccaaggagtttggagtgtcccctgacaagatcagt
ctccagcaagatgaggatgtactggacacctggttttcgtctggtctcttcccattctcc
atctttggttggcccaaccagtcagaagatctgagcgtgttctacccggggacgctgctg
gagacgggccatgacatcctcttcttctgggtggccaggatggtcatgcttggcctgaag
ctcactggcaagctgcccttcagggaggtctacctccacgccatcgtgagagatgcccac
ggccgaaagatgagcaagtctttaggcaatgtcatcgaccccctggacgtcatccacgga
gtctccttgcagggcctccacgaccagttactgagcagcaacctggatcctagtgaggtg
gagaaggctaaagaagggcagaaggcagacttcccagcagggattcccgagtgtggcacc
gacgccctgcggtttggactctgtgcctacacatctcagggtcgtgacatcaacctggac
gtgaaccggatattggggtaccgccacttctgcaacaagctctggaatgccaccaagttt
gcgctccggggccttgggaagggtttcgtgccctcgccaacctccaagcctggaggccac
gagagcctggtggaccgctggatccgcagccggctgactgaggccgtgaggcttagcaac
caaggtttccaggcctacgatttctcagctgtcaccactgcccagtacagcttctggctc
tatgagctctgtgatgtctacctggagtgcctgaagcctgtgctgaatggggtggaccaa
gtggtggccgagtgtgctcgccagaccctctacacctgcctggatgttggcctgcggctc
ctgtcacccttcatgccctttgtgactgaggagctgttccagaggctgcctcggcggaca
ccacaggccccccctagcctgtgtattaccccctacccggagccctcagagtgctcctgg
aaggaccctgatgcagaagctgccatggaactggccctaagcatcacacgggctgtgcgc
tccctgcgtgcggactacaacctcacccggatccggcctgactgtttcctggaagtggcc
gatgaggccacaggcgctctggcatcggcagtgtcaggctacgtgcaggcgctggccagt
gcgggtgtggtggccgttctggccctaggggctcccgtgccacagggctgtgctgtggcc
ctggcctctgaccgctgctccgtccacctgcagctgcaggggctggtggacccggctcgg
gagctgggcaagctgcaggccaagcgtagtgaggcacagcgccaggcacaacgtttgcgg
gagcgccgtgctgcctcaggctacccgagcaaggtgccccttgacgtccaggaggcagac
agaaccaagctccagcagacagaagcagagctcaggaaggtggatgaggccattgcgcta
ttccagaagatgctgtga
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integrated database retrieval system
